1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTCAAGGAGATCGACCCCGGGACAGGCGAGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggccgtggacggtgaagtgattggcggcatggtttgcctgcatgctttatctaggaccgggatgcgttggagccgaagccggacaagtaccagggcagtcatgtgggtgctggcagtgctgggccttagaattcaaggcctgctccccttgtcatgccgcctgtcttctcccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP04926 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAGEST: gi|161816351|gb|FC100497.1|FC100497
genomic: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
EST: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAGEST: gi|16430722|gb|BI995948.1|BI995948
genomic: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
EST: GTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAGEST: gi|15694541|gb|BI718846.1|BI718846
genomic: GTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
EST: GTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAGEST: gi|23366262|gb|BU654082.1|BU654082
genomic: GTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
EST: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAGEST: gi|23362827|gb|BU650647.1|BU650647
genomic: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
EST: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAG GTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
genomic: AGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggcc ... tctcccgcagGTGAGCCCGGCGGACTACGTGAAGCCCACGCTGCTGAGCAACTTCCGCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGGAGATCGACCCCGGGACAGGCGAGGCGGAAGAGGAGGGCTATGACGACGAGTACGTGTTGGAGGACCTGGAGgtgcgtggccgtggacggtgaagtgattggcggcatggtttgcctgcatgctttatctaggaccgggatgcgttggagccgaagccggacaagtaccagggcagtcatgtgggtgctggcagtgctgggccttagaattcaaggcctgctccccttgtcatgccgcctgtcttctcccgcag
- - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA