1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
CCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATGgtgagtgtgtcggggggtcgtaaataccagccccacactaaaccgaaccctatgcaatagagcgtggagggaggggggtaagaagagaagggggaattca...
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATG AACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTGEST: gi|23365054|gb|BU652874.1|BU652874
genomic: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATGgtgagtgtgt ... gcccccgcagAACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTG
EST: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATG AACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTGEST: gi|14230194|gb|BG849010.1|BG849010
genomic: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATGgtgagtgtgt ... gcccccgcagAACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTG
EST: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATG AACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTG
genomic: CCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATGgtgagtgtgt ... gcccccgcagAACCACCCCATTCCCAACACCGACAACGCGCACAGCGTGCAGATCATCCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCGACAAGGTCCGGGTGGTGGGCAAGGTGGTGCGCGCCATCGCCATCATGgtgagtgtgtcggggggtcgtaaataccagccccacactaaaccgaaccctatgcaatagagcgtggagggaggggggtaagaagagaagggggaattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaatacc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccacac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaccgaa