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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCGCAAGGGTGTGCGCCGCACGGACGCCAAGACCGGCAAGCCCATCAACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctggggagggggtgcaggggcggggtgcagtgtggggcgggtggaggaaaggaatggtgtccagctggcagagcgtgcagcgggcggagcaattga...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97448
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769510|gb|AV620335.1|AV620335
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|6542592|gb|AV388376.1|AV388376
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|14229691|gb|BG848507.1|BG848507
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|161796862|gb|FC083218.1|FC083218
EST:     ACTATGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGTGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|16072819|gb|BI874815.1|BI874815
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|10773200|gb|AV624023.1|AV624023
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|10771619|gb|AV622442.1|AV622442
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|14229690|gb|BG848506.1|BG848506
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|23363125|gb|BU650945.1|BU650945
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|49462045|gb|BP089958.1|BP089958
EST:     ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG
EST: gi|161817251|gb|FC104090.1|FC104090
EST:     ACTATGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAG                         GGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGTGCGCTGAAGCAG
genomic: ACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctgggg ... cactgcgtagGGTGGCCCCCACAACCACACCATCGCCGGTCTGGCCTGCGCGCTGAAGCAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTACCGCAAGGGTGTGCGCCGCACGGACGCCAAGACCGGCAAGCCCATCAACTACGACATCGAGGACAAGATCAACTTCGCCGTGTTCCCCGGCCTGCAGgtacctggggagggggtgcaggggcggggtgcagtgtggggcgggtggaggaaaggaatggtgtccagctggcagagcgtgcagcgggcggagcaattga

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atggtgt