1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggggggggggggtggaacggggcttgtgggaaggaaagcggggtggggttttagataccagcccaaactaaaccgaacccaatgcaagagagc...
species | Chlamydomonas reinhardtii |
transcript | EDO96110 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG GAAACGAACCTGCTGCTGGACAGTCTGATGCTGACTCEST: gi|16433841|gb|BI999067.1|BI999067
genomic: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggg ... gcccgcgcagGAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTC
EST: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG GAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCCEST: gi|16437402|gb|BM002622.1|BM002622
genomic: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggg ... gcccgcgcagGAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCC
EST: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG GAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCCEST: gi|16438283|gb|BM003503.1|BM003503
genomic: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggg ... gcccgcgcagGAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCC
EST: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAG GAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCC
genomic: CCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggg ... gcccgcgcagGAGACGAACCTGCTGCTGGACAGTCTGATGCTGACTCAGAGCCGCGAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTACATGGAGTACATCAACGGACTGCCGCTGATCTCGCAGCCCGAGGTGTTTGGGCTGCACGAGAACGCCGACATCACCAAGGACCTGCAGgtggggtggggggggggggtggaacggggcttgtgggaaggaaagcggggtggggttttagataccagcccaaactaaaccgaacccaatgcaagagagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaactaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aacccaa