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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTGACAATCACAGGCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcgggggccttgacagtcagccggtgtgctcgtgcctgacgcaaaccatatgtctccatacgcatggtacatctcacacgtaggttggcacgcatgtcaattccattgcccgaccatttgttcctcccctcctcctcctgtgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07885
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16431954|gb|BI997180.1|BI997180
EST:     GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAACGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
EST: gi|16436157|gb|BM001377.1|BM001377
EST:     GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
EST: gi|16437606|gb|BM002826.1|BM002826
EST:     GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
EST: gi|239842087|gb|GR283944.1|GR283944
EST:     GCCAGCCTGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
EST: gi|15702619|gb|BI726924.1|BI726924
EST:     GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
EST: gi|15703641|gb|BI727946.1|BI727946
EST:     GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACG                         GTGGGCGACTCCTGTGCTAACGGCCGGCTGTTCGCCTTCCGCTGCACCTAC
genomic: GCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcggg ... gtgcttgcagGTGGGCGACTCCTGTGCTAGCGGCCGGCTGTTCGCCTTCCGCTGCACCTAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTGACAATCACAGGCGGCCAGCCCGATGCCACGTACCCCGCGCTTCAGCAGATGGATTACACGgtgggtcgggggccttgacagtcagccggtgtgctcgtgcctgacgcaaaccatatgtctccatacgcatggtacatctcacacgtaggttggcacgcatgtcaattccattgcccgaccatttgttcctcccctcctcctcctgtgcttgcag

- - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - -  CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - -  GATGGA