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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCCCGAGCTAATCCACTACAACGCCAAGGAGTTTGACTTTGGCAAGGACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgaggcggggagggggggtggttggaagggggaggaggagcaggcggggtcaggggcgcggtgaggcgcttgtcgtgcagtgtgcatgcggctt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05666
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10776358|gb|AV633038.1|AV633038
EST:     ACAAGGCCTTCCCCATGCGCGAACAGCACTTCTTAGCCAGCGTGGATAAG                         GCCATGGCTGA
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGA
EST: gi|49463595|gb|BP091508.1|BP091508
EST:     ACAAGGCCTTCCCCATGCGCGANCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGACTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|23362880|gb|BU650700.1|BU650700
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|10775426|gb|AV632106.1|AV632106
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|49461557|gb|BP089470.1|BP089470
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|49464046|gb|BP091959.1|BP091959
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTCTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|10780788|gb|AV637468.1|AV637468
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
EST: gi|49458451|gb|BP086364.1|BP086364
EST:     ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAG                         GCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG
genomic: ACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgag ... tcccctccagGCCATGGCTGACCTGGACTGGACCCCCGAGTTTGGTCTGGTGGACGGCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGAGCCCGAGCTAATCCACTACAACGCCAAGGAGTTTGACTTTGGCAAGGACAAGGCCTTCCCCATGCGCGACCAGCACTTCTTTGCCAGCGTGGATAAGgtgaggcgaggcggggagggggggtggttggaagggggaggaggagcaggcggggtcaggggcgcggtgaggcgcttgtcgtgcagtgtgcatgcggctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtggttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcat