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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACAAGAGCGGCACCATCTCCGTGGAGGAGTTCAGCGAGGCCCTCAAAAAGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggcagtgcccctgggctggggagtgtgggcagtacacccttgggagggaggaggagggcttgtaagctaatacagccacatctggctcaagttg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP04678
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161803405|gb|FC088588.1|FC088588
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCCGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: gi|161819991|gb|FC107532.1|FC107532
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: gi|161790532|gb|FC080015.1|FC080015
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: gi|14233757|gb|BG852573.1|BG852573
EST:     AGA-GGGCATGCAGGGCCTCACG-ACGCNGACGTTAGCCGCATGATCGCC                         GAGGCGGACGTGAACGGCGACGGCACA-TCGACTACGCAGAAGTTC-TGGC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACG-AGGAGTTCCTGGC
EST: gi|10772506|gb|AV623329.1|AV623329
EST:     AGAAGGGCATGCAGGGCCTGACGGACGCGGACGTCAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: gi|14226566|gb|BG845398.1|BG845398
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAG
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAG
EST: gi|161800857|gb|FC084103.1|FC084103
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGGTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC
EST: gi|161794416|gb|FC081889.1|FC081889
EST:     AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCG                         GAGGCGGACGTGAACGGTGACGGCACAATCGACTACGAGGAGTTCCTGGCC
genomic: AGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggca ... gcgcttgcagGAGGCGGACGTGAACGGCGACGGCACAATCGACTACGAGGAGTTCCTGGCC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGACAAGAGCGGCACCATCTCCGTGGAGGAGTTCAGCGAGGCCCTCAAAAAGAAGGGCATGCAGGGCCTCACGGACGCGGACGTTAGCCGCATGATCGCGgtgggtggcagtgcccctgggctggggagtgtgggcagtacacccttgggagggaggaggagggcttgtaagctaatacagccacatctggctcaagttg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gtgtggg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tacaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggcttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagctaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagccac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctggct