1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
GCCCGCCTGAGTGCCGTGTACGGCGGCACCTACATGCTCAACCAGCCGGCGGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAGgtgggtggaaggggtgtgggtttgggtgggcggaaggatgggtttgggtgtgcaggagaggggagaggtaaccaggaggagaggcggcggtggaggggtt...
species | Chlamydomonas reinhardtii |
transcript | EDP02072 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCAAGAACGGAG CCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCGEST: gi|23365054|gb|BU652874.1|BU652874
genomic: TCAAGAACGGAGgtgggtggaa ... gcctgcgcagCCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCG
EST: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAG CCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCGEST: gi|10768527|gb|AV619352.1|AV619352
genomic: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAGgtgggtggaa ... gcctgcgcagCCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCG
EST: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAG CCGACGTGGCCCGCGCCAAGCTGGTGGTEST: gi|14230194|gb|BG849010.1|BG849010
genomic: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAGgtgggtggaa ... gcctgcgcagCCGACGTGGCCCGCGCCAAGCTGGTGGT
EST: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAG CCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCG
genomic: GGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAGgtgggtggaa ... gcctgcgcagCCGACGTGGCCCGCGCCAAGCTGGTGGTGGGCGACCCCAGCTACTTCCCCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCGCCTGAGTGCCGTGTACGGCGGCACCTACATGCTCAACCAGCCGGCGGTGGAGGTGCTGTACGAGAACGGCGTGGCGGTGGGCATCAAGAACGGAGgtgggtggaaggggtgtgggtttgggtgggcggaaggatgggtttgggtgtgcaggagaggggagaggtaaccaggaggagaggcggcggtggaggggtt
- - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtgcag