1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcgaggcaactggtggattgccgagaccggggcgacgcccgagcgcgcacggcgatgacggacgggatgtgggcggcaaggacagccggccccg...
species | Chlamydomonas reinhardtii |
transcript | EDP00001 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAGEST: gi|6547352|gb|AV393136.1|AV393136
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAEST: gi|23364946|gb|BU652766.1|BU652766
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCA
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAGEST: gi|49462877|gb|BP090790.1|BP090790
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAGEST: gi|239841472|gb|GR283329.1|GR283329
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAGEST: gi|6541675|gb|AV387459.1|AV387459
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
EST: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAGEST: gi|9458474|gb|BE452256.1|BE452256
genomic: TGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
EST: CGCTCATCCACCACTTCAAGCTCTACACCGAG GGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
genomic: CGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcga ... ccgcgcgcagGGCTTCCACGTGCCCGCCGGCGAGACCTACCGCGCCGTGGAGGCGCCCAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGTGCCCGCCCAGCCGCTCCACCATGAAGCAGTCCATGGAGGCGCTCATCCACCACTTCAAGCTCTACACCGAGgtgagcgcgaggcaactggtggattgccgagaccggggcgacgcccgagcgcgcacggcgatgacggacgggatgtgggcggcaaggacagccggccccg
- - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgggc