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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCGGCGAGTTCACGCTGGCCACCGCCGACGACTTTGAGTACACGGACCCCATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcgccggaggggtgagggctcggcggggagggtgtgttttttgtcgcttcgaggcggaaccgtgcgtgctccaagcctttacggatggctggctcctggcggcttcctgctccccagcgacgtgcccaccagacccaacgctacggagtcacccctgcacccaacccgttgcgccaccttgacacacacag

Basic information

species Chlamydomonas reinhardtii
transcript EDO99576
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239842250|gb|GR284107.1|GR284107
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|23362713|gb|BU650533.1|BU650533
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|23362950|gb|BU650770.1|BU650770
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|22060981|gb|BQ814004.1|BQ814004
EST:     ATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: ATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTT-CGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|239841383|gb|GR283240.1|GR283240
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|8576432|gb|BE128973.1|BE128973
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|239842247|gb|GR284104.1|GR284104
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCAGTGGCGCCA
EST: gi|161798352|gb|FC083522.1|FC083522
EST:     CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACGG                         ATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCA
genomic: CATTGACGGCTCCAAGGCCTCCAAGCAGGGCCTGCGCTTCGTGTTCACAGgtgagaggcg ... acacacacagATGGCTCCCGCATCATCTTCCGCCTGTCGGGCACTGGCAGCA