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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACATGGCGCACATCAGTGGCCTGGTGGCGGCGGACCTGGTGCCCTCGCCCTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaacagggggagggggaggggggcagaggtatgggagaggaagagctggcgtgggcgggggtcgcaagacggagttggatggtggggcgtcgtgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDO97448
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10769510|gb|AV620335.1|AV620335
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|6542592|gb|AV388376.1|AV388376
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|10771707|gb|AV622530.1|AV622530
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|14229691|gb|BG848507.1|BG848507
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|161796862|gb|FC083218.1|FC083218
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACCCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|16072819|gb|BI874815.1|BI874815
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|10773200|gb|AV624023.1|AV624023
EST:     CCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|10771619|gb|AV622442.1|AV622442
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|14229690|gb|BG848506.1|BG848506
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|23363125|gb|BU650945.1|BU650945
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|6542099|gb|AV387883.1|AV387883
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
EST: gi|161817251|gb|FC104090.1|FC104090
EST:     CTTCGGCTTCGCGGACGTGGTCACCACCACCACCCACAAGTCCCTGCGCG                         GTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG
genomic: CTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaaca ... taccgggcagGTCCCCGCGGCGCCATGATCTTCTACCGCAAGGGTGTGCGCCGCACGGACG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACATGGCGCACATCAGTGGCCTGGTGGCGGCGGACCTGGTGCCCTCGCCCTTCGGCTTCGCGGACGTGGTCACCACCACCACTCACAAGTCCCTGCGCGgtgaggaacagggggagggggaggggggcagaggtatgggagaggaagagctggcgtgggcgggggtcgcaagacggagttggatggtggggcgtcgtgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatggga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggatgg