1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
AGTTCACGCAGGCGGAGATCGAGCACTTTGTCAACGGCGACGACAAGCGCCACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccggaggagcgggtgggggggttcggtgagggggggttgggggtacctgtgtggctgagggctgttgagggcctggcggcagctgcgaccgagg...
species | Chlamydomonas reinhardtii |
transcript | EDO97121 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCG TGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGAEST: gi|15704468|gb|BI728773.1|BI728773
genomic: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccgg ... cgccgcgcagTGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGA
EST: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCG TGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGAEST: gi|16071477|gb|BI873473.1|BI873473
genomic: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccgg ... cgccgcgcagTGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGA
EST: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCG TGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGAEST: gi|16437012|gb|BM002232.1|BM002232
genomic: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccgg ... cgccgcgcagTGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGA
EST: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCG TGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGA
genomic: CACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccgg ... cgccgcgcagTGAGCTGCAGATGGGCGAGGAGAAAAAGGCCCAGCCCATGTCTCTGGGCGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTCACGCAGGCGGAGATCGAGCACTTTGTCAACGGCGACGACAAGCGCCACCCCAAGTTCTCGCTGGTGGCCGACCTGCGCCCGCTGCTGTACTCGCGgtagggccggaggagcgggtgggggggttcggtgagggggggttgggggtacctgtgtggctgagggctgttgagggcctggcggcagctgcgaccgagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcggtga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggctgt