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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCGCAAGTACGTGGAGGACACGCTGGCCAGCGGCAAGGTGGTGCCGGGCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcgggggggcgggggggccggggacattaggaagcggcatgcggatggatgcgcgggggaaagagggttcggccgtagcgcccggctgcgccggt...

Basic information

species Chlamydomonas reinhardtii
transcript EDO96721
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|239841886|gb|GR283743.1|GR283743
EST:     GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAG                         CGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
genomic: GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcggg ... tgccccccagCGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
EST: gi|161798448|gb|FC085724.1|FC085724
EST:     GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAG                         CGTGAGTTCGCGCTCAAGTACATGCCTGACTACCCGCTGTTCAAGCTGGTG
genomic: GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcggg ... tgccccccagCGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
EST: gi|239841887|gb|GR283744.1|GR283744
EST:     CGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAG                         CGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
genomic: CGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcggg ... tgccccccagCGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
EST: gi|15701461|gb|BI725766.1|BI725766
EST:     GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAG                         CGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG
genomic: GCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcggg ... tgccccccagCGTGAGTTCGCGCTCAAGTACATGCCCGACTACCCGCTGTTCAAGCTGGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTTCGCAAGTACGTGGAGGACACGCTGGCCAGCGGCAAGGTGGTGCCGGGCTACGGCCACGCAGTGCTGCGCAAGACGGACCCGCGCTACACATGCCAGgtacagcgggggggcgggggggccggggacattaggaagcggcatgcggatggatgcgcgggggaaagagggttcggccgtagcgcccggctgcgccggt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcggat