1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GCCTGCGCTGGGGCCGCTCGCCGGCCTCGGCTCCATAGGCGGCATCGTGCTGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTGgtgggtccaggctcccgcgcagggccagcaggccgcggcggttagtggatgcttatgatgcctgcctctgctgccagcgtgcgcgtgcaggcatgcagca...
species | Chlamydomonas reinhardtii |
transcript | EDP09909 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTG GAGTTTTTCATCGGCGCGGTGGAGAGCTGGGGCCCTCTGGGTTACCTGGCGEST: gi|15694073|gb|BI718378.1|BI718378
genomic: TGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTGgtgggtccag ... aaccctgcagGAGTTTTTCATCGGCGCGGTGGAGAGCTGGGGCCCTCTGGGTTACCTGGCG
EST: TGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTG GAGTTTTTCATCGGCGCGGTGGAGAGCTGGGGCCCTCTGGGTTACCTGGCG
genomic: TGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTGgtgggtccag ... aaccctgcagGAGTTTTTCATCGGCGCGGTGGAGAGCTGGGGCCCTCTGGGTTACCTGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCTGCGCTGGGGCCGCTCGCCGGCCTCGGCTCCATAGGCGGCATCGTGCTGCTGCTAGGTGTCGGAGCCTTGCTCAAAGACAACGTCCGGGACTTCCTGgtgggtccaggctcccgcgcagggccagcaggccgcggcggttagtggatgcttatgatgcctgcctctgctgccagcgtgcgcgtgcaggcatgcagca
- - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttagtgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgcag