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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGGTCACGGCGGTGGAGGCGGAGGCGGAGGCTTTAACACTCGCGGAGGTCGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagtattgagctctactgtatgtcaatctaatggcatctgggacgcaagggtgctgtcggcctctgctatgccgctccgggagctgccggaattgcattcggcgacgcgcacttcctcaacggcatgtctccctcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09760
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9458392|gb|BE452217.1|BE452217
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
EST: gi|15696839|gb|BI721144.1|BI721144
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
EST: gi|161790886|gb|FC080239.1|FC080239
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
EST: gi|10788283|gb|AV644955.1|AV644955
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
EST: gi|8286774|gb|BE024333.1|BE024333
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
EST: gi|8933238|gb|BE227999.1|BE227999
EST:     CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCT                         GCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG
genomic: CGCGATGACCTCGATCGTATGGCGTTACCCCGCCCCGACTTTACGAACCTgtaagtagta ... tctccctcagGCCAAAGTTCGAGAAATGTTTCTACCTGGAGCACCCAGCCGTTAGCGGGCG