1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GCAAGAAGGCAGCAAAAATGgtgcgttagcaaatacgcctgctttggtcggcggcggcggtgttgctgacggccaatgtctgtcgcgcgccttgtag
species | Chlamydomonas reinhardtii |
transcript | EDP09751 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|16072582|gb|BI874578.1|BI874578
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GCAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161821790|gb|FC107901.1|FC107901
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCGGGTGEST: gi|7616321|gb|AW721761.1|AW721761
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49460543|gb|BP088456.1|BP088456
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|7593281|gb|AW707420.1|AW707420
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|7545770|gb|AW676258.1|AW676258
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161795957|gb|FC082520.1|FC082520
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|7546067|gb|AW676555.1|AW676555
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161797070|gb|FC086806.1|FC086806
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|34990121|gb|CF564038.1|CF564038
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49460265|gb|BP088178.1|BP088178
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|34990120|gb|CF564037.1|CF564037
genomic: GCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|22073416|gb|BQ822754.1|BQ822754
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|10778824|gb|AV635504.1|AV635504
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6547782|gb|AV393566.1|AV393566
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GGCAGCAAAAATG GCCGAGCGCAAGACCANGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|8932558|gb|BE227319.1|BE227319
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|34994364|gb|CF568281.1|CF568281
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|22072934|gb|BQ822288.1|BQ822288
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161820619|gb|FC106132.1|FC106132
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49466671|gb|BP094584.1|BP094584
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|10794462|gb|AV631828.1|AV631828
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6549437|gb|AV395221.1|AV395221
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6550744|gb|AV396528.1|AV396528
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGA-CA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|22073415|gb|BQ822753.1|BQ822753
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6545312|gb|AV391096.1|AV391096
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|34991397|gb|CF565314.1|CF565314
genomic: AAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161797071|gb|FC086807.1|FC086807
genomic: AGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|22064565|gb|BQ815868.1|BQ815868
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49469754|gb|BP097615.1|BP097615
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161804657|gb|FC088413.1|FC088413
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|22066602|gb|BQ817028.1|BQ817028
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6549061|gb|AV394845.1|AV394845
genomic: AGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAGCAAAAATG GCCGAGCGCAAGACCA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161810346|gb|FC098228.1|FC098228
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|10789237|gb|AV644966.1|AV644966
genomic: CAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|6548039|gb|AV393823.1|AV393823
genomic: GGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGTGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49465097|gb|BP093010.1|BP093010
genomic: GAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|161821843|gb|FC107902.1|FC107902
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|10778555|gb|AV635235.1|AV635235
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GCAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCA-GGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|10793800|gb|AV631166.1|AV631166
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: CAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|23364202|gb|BU652022.1|BU652022
genomic: CAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: AAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTGEST: gi|49465023|gb|BP092936.1|BP092936
genomic: AAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
EST: GCAAGAAGGCAGCAAAAATG GCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
genomic: GCAAGAAGGCAGCAAAAATGgtgcgttagc ... cgccttgtagGCCGAGCGCAAGACCAGGGATATGCGGGAGATCCGCATCAGCAAGCTGGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAAGAAGGCAGCAAAAATGgtgcgttagcaaatacgcctgctttggtcggcggcggcggtgttgctgacggccaatgtctgtcgcgcgccttgtag
- AAGAAG