1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGGCTGCTGTGCCGGATGGGGTGGTCTGGGCTTTCCCTTCTGCCTGCAGCCTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgggctggtcggtgttgcagaggcatcgttctcaatccgtatgacctgcctaacgtggctccaatcaaaccgacctttcacctgggcgacttggcgacacgcag
species | Chlamydomonas reinhardtii |
transcript | EDP09734 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCEST: gi|15370392|gb|BI529818.1|BI529818
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCEST: gi|9027815|gb|BE237855.1|BE237855
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCEST: gi|22063169|gb|BQ815100.1|BQ815100
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCEST: gi|8932816|gb|BE227577.1|BE227577
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTCEST: gi|8287304|gb|BE024863.1|BE024863
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
EST: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACG CTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
genomic: CTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgg ... cgacacgcagCTTGAGCGGGACACGCTCAAGGTCAAGTGGGCCGTAAATGACTGCTGCTTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGCTGCTGTGCCGGATGGGGTGGTCTGGGCTTTCCCTTCTGCCTGCAGCCTATTGGCTCATGCTGTGGGCGCTCAATGGCGCCTTACCATTCCCTGACGgtgagcgcgggctggtcggtgttgcagaggcatcgttctcaatccgtatgacctgcctaacgtggctccaatcaaaccgacctttcacctgggcgacttggcgacacgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG