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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGGGAGGCAGCTCCTGAGCGAGAAGGACCATAGCTACCAGCCTGATGACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctccgggcgctccagcgcgacttgcgcgtccaaccggcacaacagccagcgacaacaatttgccctctgcgccgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09725
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23362202|gb|BU650022.1|BU650022
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|22062466|gb|BQ814823.1|BQ814823
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGTGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|15698430|gb|BI722735.1|BI722735
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|15698722|gb|BI723027.1|BI723027
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|23365543|gb|BU653363.1|BU653363
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|161807694|gb|FC096428.1|FC096428
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|10792448|gb|AV629814.1|AV629814
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|16438423|gb|BM003643.1|BM003643
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
EST: gi|23361748|gb|BU649568.1|BU649568
EST:     GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAG                         CGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT
genomic: GACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctcc ... cgccgcgcagCGAGACATACGAGTATTACAGCCTTCCTTACTGCCAGCCTAAGGATGGCGT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGTGGGGAGGCAGCTCCTGAGCGAGAAGGACCATAGCTACCAGCCTGATGACAAGGTGCCGCTGTGGGCTAGCAAGGTTGGACCCTTCACCAACCCCAGgtaaggctccgggcgctccagcgcgacttgcgcgtccaaccggcacaacagccagcgacaacaatttgccctctgcgccgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCAAG