1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
CCAGCACCAGCGGCAAGGCGCCGCCGCGGCGAGTGGGTATGCGCGTGGACTACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAGgtgcggtcgttaaagcgtcagtattgtaatcccatcctcaacaccagggggcttaaattactggcaatatcacacaaagcagggttgtggcttggcacgg...
species | Chlamydomonas reinhardtii |
transcript | EDP09723 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAG GCCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACGATGACCGEST: gi|16437748|gb|BM002968.1|BM002968
genomic: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAGgtgcggtcgt ... ccccccgcagGCCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACGATGACCG
EST: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAG GCCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACGATGACCGEST: gi|9210543|gb|BE337458.1|BE337458
genomic: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAGgtgcggtcgt ... ccccccgcagGCCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACGATGACCG
EST: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAG GGCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACCATGACCG
genomic: TACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAGgtgcggtcgt ... ccccccgcagGCCGCGCTACCTGCTGCCGCTGTCGGGTGCGGAGCCGCTGTACGATGACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGCACCAGCGGCAAGGCGCCGCCGCGGCGAGTGGGTATGCGCGTGGACTACGCACCGGAGACCCCCGTTCTTGTGGGGAAACGCAGCATCTCTTTAAGgtgcggtcgttaaagcgtcagtattgtaatcccatcctcaacaccagggggcttaaattactggcaatatcacacaaagcagggttgtggcttggcacgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcagtat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtggct