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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCGCCTTCACCAGCAGCGGCCGTCGCTCGGCTGTCAAGTGCCAGGCGTCCATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcatgcaagcgcaatttggcctgtcgcgtgcaagcataccgcatgagcgcttgcgcacctgtcttgtcttgtagaaaggatataaatcgcataa...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09663
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14231359|gb|BG850175.1|BG850175
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|10768717|gb|AV619542.1|AV619542
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|15704210|gb|BI728531.1|BI728531
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|9460795|gb|BE453414.1|BE453414
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|10780987|gb|AV637667.1|AV637667
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GTCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|49462133|gb|BP090046.1|BP090046
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|10772791|gb|AV623614.1|AV623614
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|14238766|gb|BG857582.1|BG857582
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|23361770|gb|BU649590.1|BU649590
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|7413175|gb|AW651929.1|AW651929
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|16436780|gb|BM002000.1|BM002000
EST:     CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
genomic: CATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAACG
EST: gi|14231358|gb|BG850174.1|BG850174
EST:     ATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCCGCGG                         GCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAAC
genomic: ATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGT-CCGCGGgtgcgtgcat ... tgacgcgcagGCCTGGCCGTGGCCCCCGCCTTTGCCAGCGTGGACCTGTCGCTGGCGAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCGCCTTCACCAGCAGCGGCCGTCGCTCGGCTGTCAAGTGCCAGGCGTCCATTGTGGAGAAGGCCAAGGCCACTGCTGCCGCTGTGATCCTGTCCGCGGgtgcgtgcatgcaagcgcaatttggcctgtcgcgtgcaagcataccgcatgagcgcttgcgcacctgtcttgtcttgtagaaaggatataaatcgcataa

- - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggcctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aagcata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atataaa