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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtgcactcaataccgaacagcaatacatatccaaagaccagcgacttgtcacccagaacttccagatgtgatcccgacccaagcgcctcaggcgcctctttcttctagtcctgaccgcgcctgtttgtttcttgcgcttgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP09609
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22070074|gb|BQ819509.1|BQ819509
EST:     AATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10778096|gb|AV634776.1|AV634776
EST:     TGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: TGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10787238|gb|AV643910.1|AV643910
EST:     CTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161808102|gb|FC099215.1|FC099215
EST:     GTCCTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GTCCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10784414|gb|AV641086.1|AV641086
EST:     AAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|239841890|gb|GR283747.1|GR283747
EST:     ATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: ATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|34993726|gb|CF567643.1|CF567643
EST:     ATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: ATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|49463053|gb|BP090966.1|BP090966
EST:     TCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: TCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|49468342|gb|BP096203.1|BP096203
EST:     GCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10782292|gb|AV638972.1|AV638972
EST:     GGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10779385|gb|AV636065.1|AV636065
EST:     GCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10777121|gb|AV633801.1|AV633801
EST:     CCTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161803466|gb|FC093069.1|FC093069
EST:     CCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10785162|gb|AV641834.1|AV641834
EST:     TCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: TCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10778614|gb|AV635294.1|AV635294
EST:     CATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10778579|gb|AV635259.1|AV635259
EST:     CAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|7593398|gb|AW707649.1|AW707649
EST:     AATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|49468452|gb|BP096313.1|BP096313
EST:     CCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10779663|gb|AV636343.1|AV636343
EST:     CCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10784478|gb|AV641150.1|AV641150
EST:     AAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|23366194|gb|BU654014.1|BU654014
EST:     AAATGGCCGCCATGATGCATAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10775697|gb|AV632377.1|AV632377
EST:     CCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10779651|gb|AV636331.1|AV636331
EST:     CAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10786448|gb|AV643120.1|AV643120
EST:     GGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|7687060|gb|AW757708.1|AW757708
EST:     CAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10782403|gb|AV639083.1|AV639083
EST:     AAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: AAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161796983|gb|FC085640.1|FC085640
EST:     TGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: TGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|34989789|gb|CF563706.1|CF563706
EST:     GCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161819056|gb|FC108872.1|FC108872
EST:     GGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10776574|gb|AV633254.1|AV633254
EST:     CAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10777605|gb|AV634285.1|AV634285
EST:     GGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: GGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161798500|gb|FC083995.1|FC083995
EST:     CTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10777098|gb|AV633778.1|AV633778
EST:     CCTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10778390|gb|AV635070.1|AV635070
EST:     CGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10783028|gb|AV639700.1|AV639700
EST:     ATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: ATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|49470785|gb|BP098646.1|BP098646
EST:     CCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|10784337|gb|AV641009.1|AV641009
EST:     CCTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161823171|gb|FC107469.1|FC107469
EST:     CAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
EST: gi|161807764|gb|FC096498.1|FC096498
EST:     CCTGTCCAAAATGGCCGCCATGATGCAGAAG                         AGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG
genomic: CCTGTCCAAAATGGCCGCCATGATGCAGAAGgtgcgcagtg ... gcgcttgcagAGCGCCTTCACCGGCAGCGCCGTGTCCTCCAAGTCTGGCGTCCGCGCCAAG