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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctactagtgctggggcaaggatgtcggccggcgcttgggactgcgcctggtagcttgtgctggccgcaataactggctccttaaatggagctcta...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09570
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6550125|gb|AV395909.1|AV395909
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551368|gb|AV397152.1|AV397152
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10792540|gb|AV629906.1|AV629906
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551210|gb|AV396994.1|AV396994
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34988704|gb|CF562621.1|CF562621
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|22053269|gb|BQ810660.1|BQ810660
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34989095|gb|CF563012.1|CF563012
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34983966|gb|CF557883.1|CF557883
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10776286|gb|AV632966.1|AV632966
EST:     CACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551499|gb|AV397283.1|AV397283
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGTGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATT
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAG-GTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATT
EST: gi|7615829|gb|AW721269.1|AW721269
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551948|gb|AV397732.1|AV397732
EST:     CACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|22053266|gb|BQ810659.1|BQ810659
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549707|gb|AV395491.1|AV395491
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549259|gb|AV395043.1|AV395043
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10790440|gb|AV627806.1|AV627806
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6552103|gb|AV397887.1|AV397887
EST:     ACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10777487|gb|AV634167.1|AV634167
EST:     GTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10783031|gb|AV639703.1|AV639703
EST:     ACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6544670|gb|AV390454.1|AV390454
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|22050106|gb|BQ809073.1|BQ809073
EST:     CCTTTTGCTGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CCTTTTGC-GGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6542397|gb|AV388181.1|AV388181
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAA-GTC-AGATGCACGAGCTCCGCAACATGAGCAAGCAGGACNCTGATT
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGAC-CTGATT
EST: gi|6550217|gb|AV396001.1|AV396001
EST:     CTCACGTGACC-TTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6550492|gb|AV396276.1|AV396276
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548530|gb|AV394314.1|AV394314
EST:     CTCACGTGACC-TTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549432|gb|AV395216.1|AV395216
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|22053279|gb|BQ810662.1|BQ810662
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6547839|gb|AV393623.1|AV393623
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548131|gb|AV393915.1|AV393915
EST:     GTGACCTTNTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548221|gb|AV394005.1|AV394005
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549495|gb|AV395279.1|AV395279
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6550869|gb|AV396653.1|AV396653
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549287|gb|AV395071.1|AV395071
EST:     ACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549629|gb|AV395413.1|AV395413
EST:     CTCACGTGACC-TTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551105|gb|AV396889.1|AV396889
EST:     CTCACGTGACC-TTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6550806|gb|AV396590.1|AV396590
EST:     TTTGCGGAAACGTAGCAAAGATGC                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: TTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6547757|gb|AV393541.1|AV393541
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551329|gb|AV397113.1|AV397113
EST:     GACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6542674|gb|AV388458.1|AV388458
EST:     ACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34988705|gb|CF562622.1|CF562622
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34983967|gb|CF557884.1|CF557884
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551031|gb|AV396815.1|AV396815
EST:     GACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10794124|gb|AV631490.1|AV631490
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549592|gb|AV395376.1|AV395376
EST:     TGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: TGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6550215|gb|AV395999.1|AV395999
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34988417|gb|CF562334.1|CF562334
EST:     CGGAAACGTAGCAGAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|9441329|gb|BE441692.1|BE441692
EST:     GTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|22064680|gb|BQ815961.1|BQ815961
EST:     CCTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CCTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549383|gb|AV395167.1|AV395167
EST:     GGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34988418|gb|CF562335.1|CF562335
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548375|gb|AV394159.1|AV394159
EST:     CGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10786293|gb|AV642965.1|AV642965
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6550286|gb|AV396070.1|AV396070
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10786408|gb|AV643080.1|AV643080
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAATGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATT
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAA-GGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATT
EST: gi|6551402|gb|AV397186.1|AV397186
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGGGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|7615410|gb|AW720854.1|AW720854
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549990|gb|AV395774.1|AV395774
EST:     TTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: TTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549941|gb|AV395725.1|AV395725
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6547864|gb|AV393648.1|AV393648
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|23358213|gb|BU646033.1|BU646033
EST:     GACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10785390|gb|AV642062.1|AV642062
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10777375|gb|AV634055.1|AV634055
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10775513|gb|AV632193.1|AV632193
EST:     CACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549560|gb|AV395344.1|AV395344
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6544002|gb|AV389786.1|AV389786
EST:     ACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|10789538|gb|AV645267.1|AV645267
EST:     CTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548013|gb|AV393797.1|AV393797
EST:     TTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: TTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|34991630|gb|CF565547.1|CF565547
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6548768|gb|AV394552.1|AV394552
EST:     GCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: GCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|49459162|gb|BP087075.1|BP087075
EST:     CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6547804|gb|AV393588.1|AV393588
EST:     CGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: CGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6549387|gb|AV395171.1|AV395171
EST:     ACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
EST: gi|6551538|gb|AV397322.1|AV397322
EST:     ACCTTTTGCGGAAACGTAGCAAAGATGG                         CCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA
genomic: ACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctact ... atgactgcagCCAAGGTCAAGATGCACGAGCTCCGCAACATGAGCAAGCAGGACCTGATTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTCACGTGACCTTTTGCGGAAACGTAGCAAAGATGGgtgagctactagtgctggggcaaggatgtcggccggcgcttgggactgcgcctggtagcttgtgctggccgcaataactggctccttaaatggagctcta

- - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - -  AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caataac