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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCTGGCGTCTGAGCTGCTTCGCGAGTCGGTGACTTGCACCCACGCCGTGGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggccggggtaccgctgtcaagggcacagattttgaattgtgcctgggattggttgctgctgacttactgtgtgtgtcagtgtgtgtgaggcagt...

Basic information

species Chlamydomonas reinhardtii
transcript EDP09559
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22048198|gb|BQ808104.1|BQ808104
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22048423|gb|BQ808213.1|BQ808213
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22073000|gb|BQ822354.1|BQ822354
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAAGTGAG-AGGACATTAGCGTTGAGATCAGCCCGGAGCGTGTGCTC
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGA-GTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTC
EST: gi|22063795|gb|BQ815424.1|BQ815424
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22048128|gb|BQ808080.1|BQ808080
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22067523|gb|BQ817605.1|BQ817605
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22075527|gb|BQ824303.1|BQ824303
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49458682|gb|BP086595.1|BP086595
EST:     GACATCTCCNGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGT
genomic: GACATCTCC-GCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGT
EST: gi|49470208|gb|BP098069.1|BP098069
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGG
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGG
EST: gi|22058591|gb|BQ813034.1|BQ813034
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49469617|gb|BP097478.1|BP097478
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCC
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCC
EST: gi|49464049|gb|BP091962.1|BP091962
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGNCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGC
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGC
EST: gi|22067741|gb|BQ817797.1|BQ817797
EST:     GGACATCTNCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22051717|gb|BQ809804.1|BQ809804
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22054182|gb|BQ811233.1|BQ811233
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCC-GGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22054786|gb|BQ811522.1|BQ811522
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22057828|gb|BQ812746.1|BQ812746
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACNNTCAGCGTTGAGATCAGCCCGGNAGCGTGTGCT
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACA-TCAGCGTTGAGATCAGCCCGG-AGCGTGTGCT
EST: gi|49468670|gb|BP096531.1|BP096531
EST:     CCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: CCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|7615737|gb|AW721177.1|AW721177
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTGCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22051077|gb|BQ809494.1|BQ809494
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|16071977|gb|BI873973.1|BI873973
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22057619|gb|BQ812676.1|BQ812676
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22069786|gb|BQ819297.1|BQ819297
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22067481|gb|BQ817581.1|BQ817581
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGACTGATGAGGACA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACA
EST: gi|22066694|gb|BQ817087.1|BQ817087
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22059485|gb|BQ813457.1|BQ813457
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22071248|gb|BQ820586.1|BQ820586
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22058585|gb|BQ813033.1|BQ813033
EST:     ACATCTCCGCGCTGGAGGACCGNCTATGTGCNTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGAC-TNCAGCGTTTGAGATCAGCCCGGNAGCGTGTGC
genomic: ACATCTCCGCGCTGGAGGACCG-CTATGTGC-TGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACAT-CAGCGTT-GAGATCAGCCCGG-AGCGTGTGC
EST: gi|22072292|gb|BQ821630.1|BQ821630
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49464998|gb|BP092911.1|BP092911
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGNCCAG                         GCATGAGTGAGGAGGACATCAGCGTTG-GATCAGCC-GGAG-GTGTG-TCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22048767|gb|BQ808370.1|BQ808370
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22074570|gb|BQ823522.1|BQ823522
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22057988|gb|BQ812810.1|BQ812810
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCA-CGTNTGAGATCAGCC-GGAAGCGTGTGCT
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGT-TGAGATCAGCCCGGA-GCGTGTGCT
EST: gi|49459216|gb|BP087129.1|BP087129
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGA
EST: gi|22075872|gb|BQ824648.1|BQ824648
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|16072592|gb|BI874588.1|BI874588
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22059432|gb|BQ813425.1|BQ813425
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22054145|gb|BQ811185.1|BQ811185
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22074900|gb|BQ823676.1|BQ823676
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49464162|gb|BP092075.1|BP092075
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGNCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGNCCGGAGCGTGTG-TCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22077085|gb|BQ825861.1|BQ825861
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGT
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGT
EST: gi|49468006|gb|BP095867.1|BP095867
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTT
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTT
EST: gi|22068347|gb|BQ818286.1|BQ818286
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22064532|gb|BQ815854.1|BQ815854
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22075463|gb|BQ824239.1|BQ824239
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49464770|gb|BP092683.1|BP092683
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGNCCAG                         GCATGAGTGAGGAGGACATCAGCGTGGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22050454|gb|BQ809233.1|BQ809233
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22076822|gb|BQ825598.1|BQ825598
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22048840|gb|BQ808408.1|BQ808408
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49464456|gb|BP092369.1|BP092369
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGGCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGACCGGAGCGTGT
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGT
EST: gi|22075195|gb|BQ823955.1|BQ823955
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22069144|gb|BQ818817.1|BQ818817
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22063980|gb|BQ815533.1|BQ815533
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGA
EST: gi|22062695|gb|BQ814890.1|BQ814890
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|49466374|gb|BP094287.1|BP094287
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCG
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCG
EST: gi|22051716|gb|BQ809803.1|BQ809803
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|16073507|gb|BI875503.1|BI875503
EST:     GACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCCAG                         -CATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTC
genomic: GACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCC-AGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTC
EST: gi|22076916|gb|BQ825692.1|BQ825692
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
EST: gi|22054945|gb|BQ811619.1|BQ811619
EST:     GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAG                         GCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA
genomic: GGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggcc ... cattcctcagGCATGAGTGAGGAGGACATCAGCGTTGAGATCAGCCCGGAGCGTGTGCTCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGTCTGGCGTCTGAGCTGCTTCGCGAGTCGGTGACTTGCACCCACGCCGTGGACATCTCCGCGCTGGAGGACCGCTATGTGCTGACGTCCGACTGCCCAGgtgagaggccggggtaccgctgtcaagggcacagattttgaattgtgcctgggattggttgctgctgacttactgtgtgtgtcagtgtgtgtgaggcagt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGGA