1 5' 3' |
AAGAGAACGGAGACGGCGAGCAGCGGGTTGTGCGGAGGTCGCTTCGCAACCGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAAgtaaggggcttgggcctgcccccttggggcacgcgtgcgggttgtttaagacggacactcacgtcacgtcgcgtgtagccccttctgctggctgtaagct...
species | Chlamydomonas reinhardtii |
transcript | EDP09474 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAA ACCCGACGCAGCTGGGGAGCAGCCGTATTCGGAGGAGGAGCGGAAGGCGCGEST: gi|10772367|gb|AV623190.1|AV623190
genomic: CGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAAgtaaggggct ... tgccgcgcagACCCGACGCAGCTGGGGAGCAGCCGTATTCGGAGGAGGAGCGGAAGGCGCG
EST: CGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAA ACCCGACGCAGCTGGGGAGCAGCCGTATTCGGAGGAG
genomic: CGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAAgtaaggggct ... tgccgcgcagACCCGACGCAGCTGGGGAGCAGCCGTATTCGGAGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGAGAACGGAGACGGCGAGCAGCGGGTTGTGCGGAGGTCGCTTCGCAACCGGGGCCAGGAGCCGGAGCTGCCGCCGCTGCTCGAACCGCTCTTTCGCAAgtaaggggcttgggcctgcccccttggggcacgcgtgcgggttgtttaagacggacactcacgtcacgtcgcgtgtagccccttctgctggctgtaagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttgttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgcgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggctgt