1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GTTCTGTCGCGCAACATGCCAGTCGTCGCGTTTTCGGCGCCTCGCTGCTTGGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGgtgagagcttcaattggagtcttgcggaatggcccttgccgggagtttgtgtggttggcgtgggcgtgcccaaaccccggtgaggctgcggtccaacgga...
species | Chlamydomonas reinhardtii |
transcript | EDP08139 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGG GTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCAEST: gi|10776099|gb|AV632779.1|AV632779
genomic: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGgtgagagctt ... tgtccgccagGTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCA
EST: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGG GTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCAEST: gi|49460540|gb|BP088453.1|BP088453
genomic: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGgtgagagctt ... tgtccgccagGTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCA
EST: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGG GTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCA
genomic: GGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGgtgagagctt ... tgtccgccagGTTCAAGAAGGAACTGAAGAAACGCAAGATCCCCGAGGAGGACTACGTGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCTGTCGCGCAACATGCCAGTCGTCGCGTTTTCGGCGCCTCGCTGCTTGGGGCCATTGCGGCGGTGTCGATGATTCCCGCTGGAGAAGCGCAAGCAGGgtgagagcttcaattggagtcttgcggaatggcccttgccgggagtttgtgtggttggcgtgggcgtgcccaaaccccggtgaggctgcggtccaacgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagtctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaaccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaggct