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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCTGTAGACCCAGTGCCCGTCGAGCTCTGGATACATATCACCCGAAGTAGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccatgtactcggcgcgcgcgcagcagctgctcaaattcaacgaatgccaagcgcaaatcctcaagcattgtttgcttcattgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP08123
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|8932854|gb|BE227615.1|BE227615
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|15702797|gb|BI727102.1|BI727102
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|161814103|gb|FC102025.1|FC102025
EST:     AGATATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|23367589|gb|BU655407.1|BU655407
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|9458733|gb|BE452386.1|BE452386
EST:     ATAAATCTACCTACAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|10780563|gb|AV637243.1|AV637243
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|23362229|gb|BU650049.1|BU650049
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|15367845|gb|BI527271.1|BI527271
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|14230397|gb|BG849213.1|BG849213
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
EST: gi|49461355|gb|BP089268.1|BP089268
EST:     AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAG                         ATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG
genomic: AGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccat ... ttcattgcagATTGTCATTCCGCACAACCTTGCGGACATTCTTAAAGCTTACACGAAAGAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGCTGTAGACCCAGTGCCCGTCGAGCTCTGGATACATATCACCCGAAGTAGAAATCTACCTAGAGAATGGACGTGGAGCCAATCTTCTGCGCGGAGCAGgtcgggccatgtactcggcgcgcgcgcagcagctgctcaaattcaacgaatgccaagcgcaaatcctcaagcattgtttgcttcattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG