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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGGCGTTTTGACCGGCGAAGTTGGGAAAATGGCTGCGACGCGGTTTTTGCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatgatagctgtgccttgccgcgcggtttgcgcctggcgccgcaacgcgtaacggggaagacttggcgtcgagggcgatgagtctgtagcgcgc...

Basic information

species Chlamydomonas reinhardtii
transcript EDP08104
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34987792|gb|CF561709.1|CF561709
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TACATCGCCCCCTC
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagT-CATCGCCCCCTC
EST: gi|34984055|gb|CF557972.1|CF557972
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCC
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCC
EST: gi|34991760|gb|CF565677.1|CF565677
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         A-ATCGCCCCCTC
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTC
EST: gi|34991761|gb|CF565678.1|CF565678
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         A-ATCGCCCCCTCG
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCG
EST: gi|15691822|gb|BI716127.1|BI716127
EST:     GGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
genomic: GGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
EST: gi|16437461|gb|BM002681.1|BM002681
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
EST: gi|6544401|gb|AV390185.1|AV390185
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
EST: gi|15697304|gb|BI721609.1|BI721609
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
EST: gi|15372687|gb|BI532113.1|BI532113
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGAGCTCCAGTGTGGCGCTCCTGAAGGAGGCTAGCTTCA
EST: gi|34985718|gb|CF559635.1|CF559635
EST:     GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTG                         TCATCGCCCCCTCGA
genomic: GCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatg ... gctgccgcagTCATCGCCCCCTCGA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGCGGCGTTTTGACCGGCGAAGTTGGGAAAATGGCTGCGACGCGGTTTTTGCTCGCAGCGGGTTTTGTGCTCCTCGCGTTGACGTCAAGCGTGAGCGCTGgtgagttatgatagctgtgccttgccgcgcggtttgcgcctggcgccgcaacgcgtaacggggaagacttggcgtcgagggcgatgagtctgtagcgcgc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tagctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggtttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttggcgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctgtag