1 5' 3' | 2 5' 3' |
CAGCATGCAAGCAAGCAAGTTCGTCCGCCGGGCGCCGGCGGACGGCCGCAGCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagctgctggatgattagtagtgcgtaaagggccactcagggcgcacccgttgcggtatcgtagcacgctagctgctgcccacgcttgtggcac...
species | Chlamydomonas reinhardtii |
transcript | EDP07923 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGG GTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACAEST: gi|14231483|gb|BG850299.1|BG850299
genomic: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagc ... gattgaacagGTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACA
EST: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGG GTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTGCACATACACACAEST: gi|14231484|gb|BG850300.1|BG850300
genomic: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagc ... gattgaacagGTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACA
EST: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGG GTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACAEST: gi|14231486|gb|BG850302.1|BG850302
genomic: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagc ... gattgaacagGTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACA
EST: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGG GTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACA
genomic: GCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagc ... gattgaacagGTGATGGCGGCGACTTCCCCTACCTCAGTCCATCGCCTCCACATACACACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAGCATGCAAGCAAGCAAGTTCGTCCGCCGGGCGCCGGCGGACGGCCGCAGCCTCGTCGTAAGCGCGTGCTGGACCGCCACGTTACAGTCAGGCCTCTGGgtaagcaagctgctggatgattagtagtgcgtaaagggccactcagggcgcacccgttgcggtatcgtagcacgctagctgctgcccacgcttgtggcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccacgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtggca