Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGCAAGATGTCGGACAAGACGTGCACTATCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttggcatggagaaggctgctggctggccgcgcgctctggaggcctggacgctgactctcatcatattgcgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07861
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP07861 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM2G151252_T01 (Zea mays), 5'ss of exon 1
-----------------CGGCAAGATGTCGGACAA----GACGTGCACTATCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtga-----gtttggcatggagaaggctgctggctgg-ccgcgcgctctggaggcctggacgctgactctcatcatat-tgcgcag--------------------
                  |||    |    | | |    | ||  |||  |||||||||||||||||||||||||||| ||||||   |||   ||||| || |     ||    ||     |   || |        ||    |  ||    | || | | |   ||||||  | || |  ||                      
TGCGGCTAGCTCAACCATGGCGGACTCCAAGGCCACCTCGGCGGTCACCCTCCGCACTCGCAAGTTCATGACCAACCGCCTGCTGGCCCGCAAACAATTTgtaagtgacgtccatcagaccaacaccttccaatcattccatcggtgctccccgtctcgtccccatctctcactaaatctctgcctctcctccctcattcttgcag

upper sequence: EDP07861 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: PP1S204_49V6.1 (Physcomitrella patens), 5'ss of exon 1
---------------------CGGCAAGATGTCGGACAAGACGTGCACTATCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttggcatggagaaggctgctggctggccgcgcgctctggaggcctggacgc---tgac-tctcatcatattgcgcag-----------------------
                     | |||  ||| | |||||| |||||||| | |||||||||||||||||||||||| |||||||     |   ||| ||||| ||     | ||     | || ||  || ||   | | |   |   | | | |     | ||  ||||| | | |   |                         
CTGAGCCCCAGCCAGCAGCAGCAGCATCATGGCTGACAAGGCGTGCACTGTGCGCACTCGCAAGTTCATGACCAACAGGCTGCTCGCCAGGAAGCAGTTCgtaagcacc-cgtg-----gcctcctttctcgcttagggtttctggaacattggcttgtgtaacacctcattagagttttcgcttggttgtggttgtgacttctca

upper sequence: EDP07861 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: PP1S37_112V6.1 (Physcomitrella patens), 5'ss of exon 1
---------------------CGGCAAGATGTCGGACAAGACGTGCACTATCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagt----ttggcatggagaaggctgctggctggccgcgcgctctggaggcctggac---gctga-ctctcatcatattgcgcag-------------
                     | |||| ||| |||||||| |||||||  | ||||||||||| |||||||||||| | |||||     |   ||| ||||| ||      ||||           | ||  ||  |  ||   ||   |   || |       ||| || |  |   |||| ||               
ATTGCCTTGGTAAGCAGGTCCCAGCAACATGGCGGACAAGGCGTGCACCGTGCGCACTCGCAAATTCATGACCAACAGACTGCTCGCCAGAAAGCAGTTCgtaagcagcgctggccctcctctccgttctttctcccatcggtttcccaactactcggttggattgagcttttctgggattgagctcttgttggttctgt

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34990273|gb|CF564190.1|CF564190
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGGGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34993205|gb|CF567122.1|CF567122
EST:     GCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCCCCCGGGCCGGGCGAACGTGTCCAAG
genomic: GCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|49470188|gb|BP098049.1|BP098049
EST:     CCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCCGGCAATTC                         ATTATNTGACGTGCTGCACCCCGGGCCCCGGGCGAACGTGTCCANAG
genomic: CCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCG-CCGGCAATTCgtgagtttgg ... tattgcgcagATTAT-TGACGTGCTGCA-CCCGGG--CCGGGCGAACGTGTCCA-AG
EST: gi|22074992|gb|BQ823768.1|BQ823768
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22048698|gb|BQ808334.1|BQ808334
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34991436|gb|CF565353.1|CF565353
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22064081|gb|BQ815610.1|BQ815610
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22070885|gb|BQ820223.1|BQ820223
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22064119|gb|BQ815625.1|BQ815625
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGTCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34988333|gb|CF562250.1|CF562250
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34992755|gb|CF566672.1|CF566672
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22073687|gb|BQ823025.1|BQ823025
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34991766|gb|CF565683.1|CF565683
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22064082|gb|BQ815611.1|BQ815611
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|161813085|gb|FC101384.1|FC101384
EST:     TCCGCACTGGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22050946|gb|BQ809427.1|BQ809427
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22055045|gb|BQ811657.1|BQ811657
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34988334|gb|CF562251.1|CF562251
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22072659|gb|BQ821997.1|BQ821997
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22050940|gb|BQ809425.1|BQ809425
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34981031|gb|CF554948.1|CF554948
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34990274|gb|CF564191.1|CF564191
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22072357|gb|BQ821695.1|BQ821695
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22071099|gb|BQ820437.1|BQ820437
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|8514457|gb|BE122352.1|BE122352
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22065622|gb|BQ816453.1|BQ816453
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCA--GCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22053108|gb|BQ810595.1|BQ810595
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22068886|gb|BQ818645.1|BQ818645
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|6551543|gb|AV397327.1|AV397327
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34985612|gb|CF559529.1|CF559529
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34993208|gb|CF567125.1|CF567125
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|4662690|gb|AI625890.1|AI625890
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34988144|gb|CF562061.1|CF562061
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34989143|gb|CF563060.1|CF563060
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34990940|gb|CF564857.1|CF564857
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34992736|gb|CF566653.1|CF566653
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34992735|gb|CF566652.1|CF566652
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34991435|gb|CF565352.1|CF565352
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22069690|gb|BQ819228.1|BQ819228
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22050943|gb|BQ809426.1|BQ809426
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|4766447|gb|AI662864.1|AI662864
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22067087|gb|BQ817333.1|BQ817333
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22067548|gb|BQ817624.1|BQ817624
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|161795398|gb|FC078555.1|FC078555
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34985613|gb|CF559530.1|CF559530
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22071098|gb|BQ820436.1|BQ820436
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|49469141|gb|BP097002.1|BP097002
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34988142|gb|CF562059.1|CF562059
EST:     TCCGCACTCGCAAGTTCATGGCCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCCCCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34990275|gb|CF564192.1|CF564192
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34988105|gb|CF562022.1|CF562022
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34985581|gb|CF559498.1|CF559498
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|161821895|gb|FC107603.1|FC107603
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGTTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22077074|gb|BQ825850.1|BQ825850
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34985580|gb|CF559497.1|CF559497
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|22074993|gb|BQ823769.1|BQ823769
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|161808269|gb|FC095924.1|FC095924
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
EST: gi|34990259|gb|CF564176.1|CF564176
EST:     TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTC                         ATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG
genomic: TCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttgg ... tattgcgcagATTATTGACGTGCTGCACCCGGGCCGGGCGAACGTGTCCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGGCAAGATGTCGGACAAGACGTGCACTATCCGCACTCGCAAGTTCATGACCAACCGGCTGCTGCAGCGCCGGCAATTCgtgagtttggcatggagaaggctgctggctggccgcgcgctctggaggcctggacgctgactctcatcatattgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGCAG