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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGCATTTACTTGCCTTGGTACATTGTAGCTGATAGCTAAAATGGCAGCACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAGgtgggggccgattctgacagctcttagggcaacttgagctgttatatacgcttagcggtgcgctgaacttggaactgggtgttctgcgcaatacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07785
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10774569|gb|AV625392.1|AV625392
EST:     CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAG                         GACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC
genomic: CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAGgtgggggccg ... cgcaatacagGACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC
EST: gi|15700217|gb|BI724522.1|BI724522
EST:     CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAG                         GACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC
genomic: CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAGgtgggggccg ... cgcaatacagGACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC
EST: gi|239841476|gb|GR283333.1|GR283333
EST:     CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAG                         GACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC
genomic: CACAAGTTATGAACAACGAGGGAATGCTCCTGGCTGTGCTCGCGGACGAGgtgggggccg ... cgcaatacagGACACAATCACAGGATTTCTGCTCGCTGGCGTCGGGAACGTGGACCTGCGC