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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTCGGCCGCCGCACACTTCCACTTCGCAAGGCCAACTGGGCCGTGGACTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagcatctggcgttccagccgtttgcgttcgcgcgcggacatccctttctggatcggcactgttgaatgccggcccgcttccttgccgtctccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07730
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10783620|gb|AV640292.1|AV640292
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14229768|gb|BG848584.1|BG848584
EST:     TAGCAGTTTCGCAACCATGTCTAAGTCTAAGACCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: TAGCAGTTTCGCAACCATGTCTAAGTCTAAG-CCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10786874|gb|AV643546.1|AV643546
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14229769|gb|BG848585.1|BG848585
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10780657|gb|AV637337.1|AV637337
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10793204|gb|AV630570.1|AV630570
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|14238988|gb|BG857804.1|BG857804
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|10782693|gb|AV639365.1|AV639365
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
EST: gi|49468820|gb|BP096681.1|BP096681
EST:     CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAG                         GACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC
genomic: CTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagc ... gtctccacagGACCTTAAAGCCCTAGATGTAGCAAAGCTGACGCCCCTGTCGCCTGAGGTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGAGTCGGCCGCCGCACACTTCCACTTCGCAAGGCCAACTGGGCCGTGGACTAGCAGTTTCGCAACCATGTCTAAGTCTAAGCCGCAGCTGCGGGAGCAGgtgcgatagcatctggcgttccagccgtttgcgttcgcgcgcggacatccctttctggatcggcactgttgaatgccggcccgcttccttgccgtctccacag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG