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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGCCGCTGGCCGCGCTGCAGTGCTTTGGCTTCTTCCGGGCTGGCGATATGCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTGGTACACCGGGGAAGgtaaatcgagccctccccgagcccggcccctcgcagtcagctccggcccctcctcggaagtcggaacctctacccgctctcgcttcctagctttcccccg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP07544
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15369275|gb|BI528701.1|BI528701
EST:     GCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTGGTACACCGGGGAAG                         GCGATGCACTGGACGCGGAAATCAACAAGTGGAAGGCTGCTGTGACGCCGC
genomic: GCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTGGTACACCGGGGAAGgtaaatcgag ... attttcacagGCGATGCACTGGACGCGGAAATCAACAAGTGGAAGGCTGCTGTGACGCCGC
EST: gi|10769136|gb|AV619961.1|AV619961
EST:     GCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTGGTACACCGGGGAAG                         GCGATGCACTGGACGCGGAAATCAACAAGTGGAAGGCTGCTGTGACGCCGC
genomic: GCCTAAAATCAGGCGACCGTCGCATGCGCACTCGTGGTACACCGGGGAAGgtaaatcgag ... attttcacagGCGATGCACTGGACGCGGAAATCAACAAGTGGAAGGCTGCTGTGACGCCGC