Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCCAAAATGAACATGAACTCTCAAGACTGGGACACCGTTGTGCTTCGCAAGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggagcctcagtcccttcccgtgtgcgcggctgctgatgcagttgtgctttgattgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07421
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10768800|gb|AV619625.1|AV619625
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10768260|gb|AV619085.1|AV619085
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49459062|gb|BP086975.1|BP086975
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCGGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|7413146|gb|AW651900.1|AW651900
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22073524|gb|BQ822862.1|BQ822862
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|14237426|gb|BG856242.1|BG856242
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10771442|gb|AV622265.1|AV622265
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22054816|gb|BQ811537.1|BQ811537
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49464081|gb|BP091994.1|BP091994
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGTGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|14230368|gb|BG849184.1|BG849184
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10779492|gb|AV636172.1|AV636172
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGAC-TGGGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCG-CAGAAAT
EST: gi|10774073|gb|AV624896.1|AV624896
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10789616|gb|AV626981.1|AV626981
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22058706|gb|BQ813076.1|BQ813076
EST:     TGTAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10793411|gb|AV630777.1|AV630777
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22054862|gb|BQ811558.1|BQ811558
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|9460035|gb|BE453031.1|BE453031
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10768483|gb|AV619308.1|AV619308
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22068291|gb|BQ818230.1|BQ818230
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|6546860|gb|AV392644.1|AV392644
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49463369|gb|BP091282.1|BP091282
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22073209|gb|BQ822547.1|BQ822547
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|15368469|gb|BI527895.1|BI527895
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22061490|gb|BQ814287.1|BQ814287
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49462653|gb|BP090566.1|BP090566
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49462549|gb|BP090462.1|BP090462
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|14234820|gb|BG853636.1|BG853636
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49464364|gb|BP092277.1|BP092277
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49459353|gb|BP087266.1|BP087266
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49458786|gb|BP086699.1|BP086699
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|14240460|gb|BG859276.1|BG859276
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22069541|gb|BQ819108.1|BQ819108
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10771832|gb|AV622655.1|AV622655
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49458226|gb|BP086139.1|BP086139
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|6544005|gb|AV389789.1|AV389789
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10791438|gb|AV628804.1|AV628804
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|14238923|gb|BG857739.1|BG857739
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49459305|gb|BP087218.1|BP087218
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22072369|gb|BQ821707.1|BQ821707
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|6544006|gb|AV389790.1|AV389790
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATTTA
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAATTTA
EST: gi|22062921|gb|BQ815004.1|BQ815004
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49458703|gb|BP086616.1|BP086616
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49462920|gb|BP090833.1|BP090833
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|10778538|gb|AV635218.1|AV635218
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|22075787|gb|BQ824563.1|BQ824563
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|16072973|gb|BI874969.1|BI874969
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
EST: gi|49461876|gb|BP089789.1|BP089789
EST:     AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCG                         GCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT
genomic: AGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggag ... ttgattgcagGCACGGCGGCAAGGTGCAGCTGTGGAGACGTCGCAGAAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCCAAAATGAACATGAACTCTCAAGACTGGGACACCGTTGTGCTTCGCAAGAAGCAGCCTACTGGCGCAGCGCTGAAGGACGAAGCCGCTGTCAATGCGgtgcgtggagcctcagtcccttcccgtgtgcgcggctgctgatgcagttgtgctttgattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG