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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATTCTTGACACGGGGGAGAGGCATGGGCAGGGATGTTGATGGTGTGCAGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACCgttgtgccatcacgttgcgtcgcgtgctgtttgt

Basic information

species Chlamydomonas reinhardtii
transcript EDP07342
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16430525|gb|BI995751.1|BI995751
EST:     AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACC                         GTGTGAGTGGCTCTCTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT
genomic: AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACCgttgtgccat ... tgctgtttgtGTGTGAGTGGCTCTCTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT
EST: gi|15371312|gb|BI530738.1|BI530738
EST:     AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACC                         GTGTGAGTGGCTCTCTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT
genomic: AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACCgttgtgccat ... tgctgtttgtGTGTGAGTGGCTCTCTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT
EST: gi|8576558|gb|BE129195.1|BE129195
EST:     AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACC                         GTGTGAGTGGCTCTTTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT
genomic: AGCAGCGTGCGACTGCGGGCTTCACTGCATCTGACGTTGACAGCGCGACCgttgtgccat ... tgctgtttgtGTGTGAGTGGCTCTCTGGACCGCGCTGGAAAGCGCTGGTGCGGGCAGGACT