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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACTATGTGCCAATCGAGGAGAAGGAGCGACGGAAGCTGGAGTATGAGATTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaagcaagagagccccggccagggctctccgaatcatgtctccgcagctcctcgagctaaccgccctcactgctctcaacgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07139
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|23363324|gb|BU651144.1|BU651144
EST:     TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG                         TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
EST: gi|10770647|gb|AV621472.1|AV621472
EST:     TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG                         TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
EST: gi|23364755|gb|BU652575.1|BU652575
EST:     TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAG                         TTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC
genomic: TTCACCGGCTTGTGGTGAACCGTGACCCCAAGCACACAAACTTTCTGGAGgcaggtcaag ... ctcaacgcagTTCCGCAACTACAAGGTCGTGTATCGGCGATACGCGGGCCTGTTTTTCTCC