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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCATGCAGTGCCTCCAGAAGCAGGCGCAGCGCTGTGGCGCGAAGAATGCTCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgcaccgcgcaagcttgcatggcaacccgtccactcgttctcaacttgctccccatctctcctttggcccccacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP07040
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15695978|gb|BI720283.1|BI720283
EST:     TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCG                         TTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
genomic: TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgc ... gcccccacagTTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
EST: gi|10791803|gb|AV629169.1|AV629169
EST:     TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCG                         TTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
genomic: TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgc ... gcccccacagTTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
EST: gi|15699188|gb|BI723493.1|BI723493
EST:     TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCG                         TTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
genomic: TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgc ... gcccccacagTTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
EST: gi|49467273|gb|BP095186.1|BP095186
EST:     TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCG                         TTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
genomic: TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgc ... gcccccacagTTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
EST: gi|15699186|gb|BI723491.1|BI723491
EST:     TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCG                         TTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG
genomic: TCAGGCTTGCCCGATCAAGGCTAGCGGCGTGCGCTCCAGCCGGCGCGCCGgtaagcttgc ... gcccccacagTTAAGGCGCTGGCCGTTGCTGCTGCTCCTGCTAAGAAGGCCCAGGCCTCCG