1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
ATCATGTTGGGCCAGCTCTTTAACAAGGAGACGCAGGCGATTTTCTTCAACTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctcgctcgcacgtgccctggagatgttcggtagaacgcgcaattttgggcgagcgagagcgatctggcgcttcactggccgcgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP06930 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCG GGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCGEST: gi|10792316|gb|AV629682.1|AV629682
genomic: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctc ... ccgcgcgcagGGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCG
EST: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCG GGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCGEST: gi|6541371|gb|AV387155.1|AV387155
genomic: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctc ... ccgcgcgcagGGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCG
EST: GTGCAGCGCATGCTTGATTTTGACTTCGTTTGCG GGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCGEST: gi|8286712|gb|BE024271.1|BE024271
genomic: GTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctc ... ccgcgcgcagGGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCG
EST: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCG GGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCG
genomic: CTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctc ... ccgcgcgcagGGCGCGAGACTCCATCTGTCGCTGCTCTGGTGACACCCGGCAGCTCGGGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCATGTTGGGCCAGCTCTTTAACAAGGAGACGCAGGCGATTTTCTTCAACTACAAGGAGAAGCCTGTGCAGCGCATGCTTGATTTTGACTTCGTTTGCGgtaggctctcgctcgcacgtgccctggagatgttcggtagaacgcgcaattttgggcgagcgagagcgatctggcgcttcactggccgcgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC