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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCACCGACGAGGAGCGCCTGATCGGCGACGCTGCCAAGAACCAGGCTACCGTCAACCCCAAGCGCACCATCTACGACGTCAAGCGCCTGATCGGCCGCAAgtaagcagccgaactgttacctgcgtgcgtgcggcggctcctgggtgcgccggggtgcataggccggggtaggcagcaggggttccctggtaggcagcaggggaggcttgcttccagcggccgccgcatgtgcgtgcgtgccatccccctttctgctcgtttctgctaacccgctcctccaccaacccacgctcaaccag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06859
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP06859 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM2G114793_T01 (Zea mays), 5'ss of exon 2
TCACCGACGAGGAGCGCCTGATCGGCGACGCTGCCAAGAACCAGGCTACCGTCAACCCCAAGCGCACCATCTACGACGTCAAGCGCCTGATCGGCCGCAAgtaagcagccgaactgttacctgcgtgcgtgcggcggctcctgggtgcgccggggtgcataggccggggtaggcagcaggggttccctggt-aggcagcaggggaggcttgcttccagcggccgccgcatgtgcgtgcgtgccatccccctttctgctcgtttctgctaacccgctcctccaccaacccacgctcaaccag
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TCACCGATAGCGAGAGGCTCATCGGTGAGGCTGCCAAGAACCAGGCAGCCGTCAACCCTGAGAGGACCATCTTTGACGTCAAGCGTCTCATCGGAAGAAAgtaacacctctctcctacagttacttctgttgaatttcgtctcgttgtg---ggttatttctggcgtcttaa-ctttagtaatgccccatttatttag-------------------------------------------------------------------------------------------------------