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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTTCGAAGCAGGTCAAGATGGGCGCCTACAAGgtgcgatagctcaaagcctcataccagcatctgcagccgccggccgacattctctgaacttacgcgactggtcgctctttccttggaccccgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06755
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6552238|gb|AV398022.1|AV398022
EST:     CAGGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: CAGGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34988770|gb|CF562687.1|CF562687
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7593546|gb|AW707797.1|AW707797
EST:     GCAGGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCAGGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|6552208|gb|AV397992.1|AV397992
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161821357|gb|FC109496.1|FC109496
EST:     GATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|9458702|gb|BE452370.1|BE452370
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34987006|gb|CF560923.1|CF560923
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49469899|gb|BP097760.1|BP097760
EST:     GATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22071689|gb|BQ821027.1|BQ821027
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49468426|gb|BP096287.1|BP096287
EST:     CAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: CAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49460406|gb|BP088319.1|BP088319
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|8828310|gb|BE212040.1|BE212040
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|8828641|gb|BE212371.1|BE212371
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161824213|gb|FC110968.1|FC110968
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22065261|gb|BQ816274.1|BQ816274
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161824214|gb|FC110969.1|FC110969
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22048145|gb|BQ808090.1|BQ808090
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34993190|gb|CF567107.1|CF567107
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161810348|gb|FC099361.1|FC099361
EST:     GGCGCCTCCAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22075202|gb|BQ823978.1|BQ823978
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161793489|gb|FC078401.1|FC078401
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34993311|gb|CF567228.1|CF567228
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161820332|gb|FC105897.1|FC105897
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7615425|gb|AW720868.1|AW720868
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22065766|gb|BQ816549.1|BQ816549
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7615592|gb|AW721032.1|AW721032
EST:     AAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22048171|gb|BQ808121.1|BQ808121
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161792378|gb|FC079253.1|FC079253
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22075493|gb|BQ824269.1|BQ824269
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161814977|gb|FC104290.1|FC104290
EST:     GATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161798508|gb|FC084003.1|FC084003
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34993101|gb|CF567018.1|CF567018
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7687040|gb|AW757688.1|AW757688
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22070653|gb|BQ819991.1|BQ819991
EST:     TGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|8286603|gb|BE024162.1|BE024162
EST:     TCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22067027|gb|BQ817297.1|BQ817297
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22073418|gb|BQ822756.1|BQ822756
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161817680|gb|FC104415.1|FC104415
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161801340|gb|FC088486.1|FC088486
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10785124|gb|AV641796.1|AV641796
EST:     TGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34985355|gb|CF559272.1|CF559272
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161797475|gb|FC086301.1|FC086301
EST:     CTCTTTTCGAAGCAGGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: CTCTTTTCGAAGCAGGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10770133|gb|AV620958.1|AV620958
EST:     AAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161810349|gb|FC099362.1|FC099362
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161796249|gb|FC086543.1|FC086543
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10779017|gb|AV635697.1|AV635697
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|23366994|gb|BU654813.1|BU654813
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34985821|gb|CF559738.1|CF559738
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49460133|gb|BP088046.1|BP088046
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7687412|gb|AW758060.1|AW758060
EST:     TGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49467187|gb|BP095100.1|BP095100
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161799382|gb|FC086047.1|FC086047
EST:     CAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: CAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161819330|gb|FC109354.1|FC109354
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34985422|gb|CF559339.1|CF559339
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22071143|gb|BQ820481.1|BQ820481
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10126334|gb|BE725038.1|BE725038
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161816067|gb|FC100174.1|FC100174
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161819329|gb|FC109353.1|FC109353
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGTTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22060261|gb|BQ813734.1|BQ813734
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7616294|gb|AW721734.1|AW721734
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161807238|gb|FC097311.1|FC097311
EST:     GATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161820333|gb|FC105898.1|FC105898
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10786522|gb|AV643194.1|AV643194
EST:     TCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161793490|gb|FC078402.1|FC078402
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7687748|gb|AW758394.1|AW758394
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49459630|gb|BP087543.1|BP087543
EST:     AAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34985205|gb|CF559122.1|CF559122
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|10126333|gb|BE725037.1|BE725037
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49465526|gb|BP093439.1|BP093439
EST:     CAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: CAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34988389|gb|CF562306.1|CF562306
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161815759|gb|FC103187.1|FC103187
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|161792379|gb|FC079254.1|FC079254
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|7545930|gb|AW676418.1|AW676418
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34988726|gb|CF562643.1|CF562643
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49470312|gb|BP098173.1|BP098173
EST:     GTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22062675|gb|BQ814886.1|BQ814886
EST:     TCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49458504|gb|BP086417.1|BP086417
EST:     GCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|22056256|gb|BQ812242.1|BQ812242
EST:     GGTCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGTCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|6552168|gb|AV397952.1|AV397952
EST:     GGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34984147|gb|CF558064.1|CF558064
EST:     AGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: AGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|49459631|gb|BP087544.1|BP087544
EST:     TCAAGATGGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: TCAAGATGGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
EST: gi|34984469|gb|CF558386.1|CF558386
EST:     GGGCGCCTACAAG                         TACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG
genomic: GGGCGCCTACAAGgtgcgatagc ... gaccccgcagTACATTGAGGAGCTGTGGCGCAAGAAGCAGAGCGATGTGCTCCGCTTCCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTCTTTTCGAAGCAGGTCAAGATGGGCGCCTACAAGgtgcgatagctcaaagcctcataccagcatctgcagccgccggccgacattctctgaacttacgcgactggtcgctctttccttggaccccgcag

- - - - - - - - - AAGATG