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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTGGCGCGACTCTGTGGGCTGGAGCGAACAGTCTCTTCAACGTGGAGGGTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattttacttggtacttcgaagtagaacgtagatcgtgtttggaggcatcggaaacctgcatcgcctgcccgccggccgagttccgacgattggcacacacgttatgctcgaaacctcacgaagcggcttcgctggatgcag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06728
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7615357|gb|AW720803.1|AW720803
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22073301|gb|BQ822639.1|BQ822639
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22072935|gb|BQ822289.1|BQ822289
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACTCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGCCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22063534|gb|BQ815265.1|BQ815265
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|10768806|gb|AV619631.1|AV619631
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|161814815|gb|FC100657.1|FC100657
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22072634|gb|BQ821972.1|BQ821972
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22050250|gb|BQ809141.1|BQ809141
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22068051|gb|BQ818019.1|BQ818019
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22051498|gb|BQ809699.1|BQ809699
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCTGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22055652|gb|BQ811951.1|BQ811951
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22050251|gb|BQ809142.1|BQ809142
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|10779232|gb|AV635912.1|AV635912
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22072937|gb|BQ822291.1|BQ822291
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGGGGGCATCAAGGACACG                         GGCTACGCGGAAGG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGG
EST: gi|10780162|gb|AV636842.1|AV636842
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|15696927|gb|BI721232.1|BI721232
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|15369591|gb|BI529017.1|BI529017
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|161821633|gb|FC108134.1|FC108134
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22067190|gb|BQ817392.1|BQ817392
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22064606|gb|BQ815890.1|BQ815890
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22070334|gb|BQ819715.1|BQ819715
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22049281|gb|BQ808712.1|BQ808712
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22073537|gb|BQ822875.1|BQ822875
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22074365|gb|BQ823420.1|BQ823420
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|23364284|gb|BU652104.1|BU652104
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|161801894|gb|FC090730.1|FC090730
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|49461236|gb|BP089149.1|BP089149
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
EST: gi|22071207|gb|BQ820545.1|BQ820545
EST:     GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACG                         GTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG
genomic: GTGGTCACCGCGCGATCGTGTTCAATCGGGTTGTGGGCATCAAGGACACGgtgcgcattt ... ctggatgcagGTCTACGCGGAAGGGACGCACATTATGGTGCCATGGTTTGAGCGGCCCGTG