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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06643
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: LOC_Os05g38820.5 (Oryza sativa), 5'ss of exon 1
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||  |||||  ||||| ||| || |||||||| || |||||||| || |||||||||||||| ||||||||   |||||||||    |||| |||    |    |  |  | |   |   |  | | || |    |  | |   |  | |  |        ||   |  |    |  ||  | ||     |   ||   |||| |    || | ||  || | || ||   |||     ||  |  ||
TCATGAAGAAGGCCATCCCGGCCAACGGGAAGATCGCCAAGGACGCCAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACCAGCGAgtgagtcgtcgccctcgtcctcccccctcttgtgctctgctctgctctgctctgtcttcttttgagttttgagctttgagct---cgttgtttgacttgtcgttggcggcgatgag--atgtgactgggtttt-tgttgtggtggggca-acattacag

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: LOC_Os05g49780.1 (Oryza sativa), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatg-cattctatgctgatatggtttgcactatgtag
| |||     |||  | ||| | ||||  || || ||||||||  | |||||| | ||||||||||||||||| |||||||| |||||||||||    |||| ||||||     |||       |   ||   | |  |   |||  |    |     |      ||  |    |     ||  ||  |   ||  ||||     |    ||||   || || | || |   |     ||  ||  ||  |    || ||
TCATGCGCCGGGCCGTGCCGGAGAACGGCAAGATCGCCAAGGACTCCAAGGAGTCCGTCCAGGAGTGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtcagtgtcgcctcgcctttgtatttgctgtatatatcggtgccggagcttgcttgatccgatccagttcggagcggcggcggcgcattttgtcgtgcacctgccgtgcagatggcaagggtgactgacggccatctttggcatctttccc----tgcag

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: LOC_Os01g61810.3 (Oryza sativa), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgc-acagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||  |||||   ||||  || || |||||||| || ||||||||  | |||||||||||||||||||||||   |||| ||||    |||| ||| |  | |||| | |   | ||     ||  | |||| | ||    |  |    || | |     | |   ||   |      ||| |  |      |  ||   ||  |||| |  |     ||                              
TCATGAAGAAGGCCGTCCCGGCGAACGGCAAGATCGCCAAGGACGCCAAGGAGACCCTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCGTCACCAGCGAgtgagtctgcgcgggctcggt-accgt-----gatcctgccctccccacaccttcttttgtgatgg---ttggtttagggtgtgattttgctttgctttgtggtttgggcggtggtgcgggatggg-acag-----------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM2G064426_T02 (Zea mays), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgc-cgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatat----ggtttgcactatgtag
| |||||||||||  |||||   |||| ||| || |||||||| || |||||||| || |||||||||||||||||||||||   |||||||||    ||||||||  || ||    |||| ||||       || | | | |  | ||   |   ||  ||  |||   |  |    ||     || |  || |||    ||| |   |||  ||   | ||  |    | ||| |   |  |     || |||  | || ||
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCGGAGTTCATCTCCTTCATCACTAGCGAgtaagtccctcgg----ccgcggctg-------actctgactcttctgtttgcttggcatgttgggaattca-gagtggcgtttcgcaa-accgcactt-tagcttaggtggg-gttttgtgttgacttgt-ctacgtccacgttccttgtctgctgtttgcag

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM2G478501_T01 (Zea mays), 5'ss of exon 1
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacg-cacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||      ||| | ||| | ||||  || || || | ||| || | |||| |  |||||||||||||||| |||||||| |||||||||||    ||||||  |||      |||  ||  | | |       || |  ||    | | | |   | |  |  || |   |||    |   |||  || |  || | |    | ||| ||| |    |||   ||||                              
TCATGCGCCGCGCGGTGCCGGAGAACGGAAAGATCGCTAGGGACGCCAGGGAGTCCATCCAGGAGTGCGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtaaa-gtc------cccttcccttatctcctcgtccgccttcca--attgtctcaaacttt-gatgctcccaccc----cttggcctcgcatgccgactcgctgtccattgattttt--cgtctctgcag-----------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM5G804893_T01 (Zea mays), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||  |||||   |||| ||| || |||||||| || |||||||| || |||||||||||||| ||||||||   |||||||||    ||||||||| ||  |    | || ||||             | |   |  | ||       ||  |||    | |    ||       || | ||   ||   ||  |  |   ||||  |  |        || | | |  | || |  || || || ||
TCATGAAGAAGGCCATCCCGGCTAACGGGAAGATCGCCAAGGACGCTAAGGAGACCGTGCAGGAGTGCGTCTCCGAGTTCATCTCCTTCATCACTAGCGAgtaagtgcctcag----ctgcggctg------------actcttacttttgcttggcttgttgggaatt-tggagtggcgt----tcagggctttagcttggctggggttt-tgtgttgacttgtccatgtccacgtttttttg-tccgctctttgcag

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: GRMZM2G480621_T01 (Zea mays), 5'ss of exon 1
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||      ||| |  || | ||||  || || || | |||||| | |||| |  |||||||||| ||||| |||||||| |||||||||||    ||||||||  |       |||  | ||  | |      ||||  ||    | | | |   | || |  || |   |||          ||||||  || | | |          | |||||                                        
TCATGCGCCGCGCGGTGACGGAGAACGGAAAGATCGCTAGGGATGCCAGGGAGTCCATCCAGGAGTGTGTCTCCGAGTTCATCAGCTTCATCACCAGCGAgtaagtcccct----tcccttctctcctcg----tccggcttcca--attgtctcaaac-tctgatgctcccaccccttggcctcgcatgccg-actcgctgtccattcatctctgcag----------------------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: AT2G38880.7 (Arabidopsis thaliana), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgccca---gcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||| ||| | ||    || |  || || |  || ||||| ||||| || || ||||| |||||||| |||||||| |||||||||||    ||||| |  |                |      | |   |          |    | |   |     |    |||  ||   |   |||     |  |   |                                                              
TCATGAAGAAAGCGTTGCCTCCTAATGGTAAGATTGGAAAAGATGCTAAGGATACAGTTCAGGAATGCGTCTCTGAGTTCATCAGCTTCATCACTAGCGAgtatgcattcccaatttttcttctttcaatcgaatttgttggaaaatattttgctctttggtgaaaaaaattgatcatttgttggaactttgggtttgtg--------------------------------------------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: Vv13s0019g03600.t01 (Vitis vinifera), 5'ss of exon 2
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||| | |||   || |  || || ||||||||||| ||||| || ||||| ||||||||||| |||||||| || ||||||||    ||||| | |     |  | |   | || ||      |        | |||  |     |   |  ||     |||   |  | || |  ||   |  |    |     |                                                    
TCATGAAGAAGGCGTTGCCGGCTAATGGTAAGATCGCCAAGGATGCGAAGGACACTGTCCAAGAGTGCGTCTCCGAGTTCATCAGTTTCATCACCAGCGAgtacgcg-----gatctctctctcttttcttttccttctatttctccgatgattgtgtttt--gggttatttgattaaaaggatgaaatcttttccttctatttctc----------------------------------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: EFJ15374 (Selaginella moellendorffii), 5'ss of exon 1
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgtctgggggccccgccgctgtttggggacac-ggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||||| |||   || || || || ||||||||||| ||||||||||| || || ||||||||||||||||| |||||||||||    |||||||| |      ||  ||   || | ||| ||      |   |  | ||  |   |  |                                                                                                   
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCGGAGTTCATCAGCTTCATCACTAGCGAgtaagtatt-----gcttcgatcctttgtggtgatgttaactatcttcttctactttgtag---------------------------------------------------------------------------------------------------

upper sequence: EDP06643 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: EFJ24973 (Selaginella moellendorffii), 5'ss of exon 1
TTATGAAGAAGGCGCTCCCGAACAACGCGAAAATAGCCAAGGATGCAAAGGAGACGGTCCAGGAGTGCGTCTCGGAGTTCATTAGCTTCATCACGTCGGAgtaagtgt--ctgggggccccgccgctgtttggggacacggcccccgccgtcgcccccgccgtcaggagcccttgcccagcacgaagccatgcctcacgcacagcatgcatggatgtgcagcgtaaatgcattctatgctgatatggtttgcactatgtag
| |||||||||||||| |||   || || || || ||||||||||| ||||||||||| || || |||||||| |||||||| |||||||||||    |||||||| |  ||||  |  |   || |  || | |      |   |  | ||  |   || |                                                                                                   
TAATGAAGAAGGCGCTGCCGGCGAATGCAAAGATCGCCAAGGATGCCAAGGAGACGGTGCAAGAATGCGTCTCAGAGTTCATCAGCTTCATCACTAGCGAgtaagtattgctggaagttctttcgatcctttgtggtgatactatcttcttctactttgcag---------------------------------------------------------------------------------------------------