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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCTAGGTGCAATAATGGCAGGCACATTTAAGAAGTTCTCTAAAGAGGACGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCGgtgcgtcgcacgctgcgtacagggcttgcttgtatgatatgaattcccagatctgacgcggctgacgtcttacactcccaaaacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP06185
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|14240847|gb|BG859663.1|BG859663
EST:     CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCG                         CCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA
genomic: CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCGgtgcgtcgca ... cccaaaacagCCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA
EST: gi|15697896|gb|BI722201.1|BI722201
EST:     CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCG                         CCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA
genomic: CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCGgtgcgtcgca ... cccaaaacagCCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA
EST: gi|15692184|gb|BI716489.1|BI716489
EST:     CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCG                         CCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA
genomic: CGTGAGCAATCTGTCGCAAGTGAAGTCGTCCGTGGCGCGCGGCATCCGCGgtgcgtcgca ... cccaaaacagCCGCCATCTGCGAGACGTATCCCTACCTCGAGGAGACCGACATCATTGAGA