1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCATTTTTCAGCGTCCGCAAAGAAGAATGAAGAAAGCTACGGACCGCGACAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATGgcaagtttacgacccacgagtaaaattgcagagccgcagcgcgtggggctggccttaggtggtcacagtgcgatggttccccgcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05829 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATG GCACGCTCTGGAAAGGCAGTACGCTTATTCCGGGGGCGAAGGAGTTTATTGEST: gi|22063379|gb|BQ815176.1|BQ815176
genomic: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATGgcaagtttac ... ccccgcgcagGCACGCTCTGGAAAGGCAGTACGCTGATTCCGGGCGCGAAGGAGTTTATTG
EST: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATG GCACGCTCTGGAAAGGCAGTACGCTGATTCCGGGCGCGAAGGAGTTTATTGEST: gi|15693862|gb|BI718167.1|BI718167
genomic: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATGgcaagtttac ... ccccgcgcagGCACGCTCTGGAAAGGCAGTACGCTGATTCCGGGCGCGAAGGAGTTTATTG
EST: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATG GCACGCTCTGGAAAGGCAGTACGCTGATTCCGGGCGCGAAGGAGTTTATTG
genomic: CAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATGgcaagtttac ... ccccgcgcagGCACGCTCTGGAAAGGCAGTACGCTGATTCCGGGCGCGAAGGAGTTTATTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCATTTTTCAGCGTCCGCAAAGAAGAATGAAGAAAGCTACGGACCGCGACAAGCTCGAGGCCTTTCAACAATATGATGCCTGGGTATTCGACCTAGATGgcaagtttacgacccacgagtaaaattgcagagccgcagcgcgtggggctggccttaggtggtcacagtgcgatggttccccgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT