1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TTTAGGGGCTAAGCCCCCCCGCGGGCTCGGCGAAGTCGAAATGGGACAGAACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgactttgtttcagatcccgggcttgctgggtgtagaactgggttggaactgaggacactaggcgaaaattgcccatgtggtcatcgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05705 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|22063603|gb|BQ815318.1|BQ815318
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|15368325|gb|BI527751.1|BI527751
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|14225963|gb|BG844779.1|BG844779
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|16437276|gb|BM002496.1|BM002496
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|8401114|gb|BE056748.1|BE056748
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|15695862|gb|BI720167.1|BI720167
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|23363212|gb|BU651032.1|BU651032
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|10126813|gb|BE725517.1|BE725517
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|15693748|gb|BI718053.1|BI718053
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAGEST: gi|10794172|gb|AV631538.1|AV631538
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
EST: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAG GAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
genomic: ACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgact ... gtcatcgcagGAAAAGAAGAAGAAGTACGAGCCCCCGGCTCCCCCTCCTCGTGTGGGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAGGGGCTAAGCCCCCCCGCGGGCTCGGCGAAGTCGAAATGGGACAGAACCAGAGTGCACAAGGCCCGGGAGCGCCCGGCGAGGGCAAGAAGGACCAGgcaagtgactttgtttcagatcccgggcttgctgggtgtagaactgggttggaactgaggacactaggcgaaaattgcccatgtggtcatcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG