Sequence
atgc intronic sequence ATGC exonic sequenceCCCCTGCTGGACGAGAACCCCGACCGCTTCTGCATGTTCCCTATTAAGTACCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctcagcaactcgtttgtttttcgaaatggagctcgctgctagcgccacgtcgctaaccccgcgaattccctcttactattctgcctgcag
Basic information
species | Chlamydomonas reinhardtii |
transcript | EDP05574 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: EDP05574 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: PP1S41_228V6.1 (Physcomitrella patens), 5'ss of exon 3
CCCCTGCTGGACGAGAACCCCGACCGCTTCTGCATGTTCCCTATTAAGTACCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctcagcaactcgtttgtttttcga--aatggagctcgctgctagcgccacgtcgctaaccccgcgaattccctcttactattctgcctgcag--
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CCGATTTTGATGGAAAATCCAAACCGATTCACAATGTTCCCCATCAAGTACCCTCAAGTATGGGAAATGTACAAGAAGGCAGAAGCTTCTTTCTGGACAGgtaagtc-tcatttccttgtccagacatcaatcgtcgtagtcatgcggaaatcataggatggtccctccaccaaggttttttcggaattaatcttgccatt
upper sequence: EDP05574 (Chlamydomonas reinhardtii), 5'ss of exon 1
lower sequence: EFJ25175 (Selaginella moellendorffii), 5'ss of exon 1
CCCCTGCTGGACGAGAACCCCGACCGCTTCTGCATGTTCCCTATTAAGTACCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctcagcaactcgtttgtttttcgaaatggagctcgctgctagcgcca-cgtcgctaac--cccgcgaattccctcttactattctgcctgcag
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CCCATTCTCGCCGACAATCCACAGCGCTTCTGTATGTTCCCGATTCGCTACCCCAGGGTGTGGGAGATGTACAAAAAGGCCGAGGCGAGCTTCTGGACTGgtgag--------atccggtttctagctagaaatccccttcgtttcatttgccagcgccgctaagagttggggcatttcag-------------------Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|49466716|gb|BP094629.1|BP094629EST: CCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTG CTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGG
genomic: CCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctc ... ctgcctgcagCTGAGGAGGTCGACCTGGGCGACGACATGAAGCACTGGGAGAAGCTGTCGG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
CCCCTGCTGGACGAGAACCCCGACCGCTTCTGCATGTTCCCTATTAAGTACCCTCAGATTTGGGAGATGTACAAGAAGGCCGAGGCGTCGTTCTGGACTGgtgagtcctcagcaactcgtttgtttttcgaaatggagctcgctgctagcgccacgtcgctaaccccgcgaattccctcttactattctgcctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG