Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTTTCAAGGCAGCTGAAAGATGgtgagactagacgcaacttgggagctggctctgccgccggcagcagacatcagacttttattctaggcggcagcgctatacctgactcgctcgctaccttgccatcgctgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05500
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34988161|gb|CF562078.1|CF562078
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34988803|gb|CF562720.1|CF562720
EST:     GCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10783401|gb|AV640073.1|AV640073
EST:     CAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: CAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10125832|gb|BE724536.1|BE724536
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34988802|gb|CF562719.1|CF562719
EST:     GCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34986739|gb|CF560656.1|CF560656
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|15372414|gb|BI531840.1|BI531840
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|34993615|gb|CF567532.1|CF567532
EST:     TCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10788274|gb|AV644946.1|AV644946
EST:     GTGCTTTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GTGCTTTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10786077|gb|AV642749.1|AV642749
EST:     TTCAAGGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: TTCAAGGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
EST: gi|10788170|gb|AV644842.1|AV644842
EST:     GGCAGCTGAAAGATG                         GACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC
genomic: GGCAGCTGAAAGATGgtgagactag ... atcgctgtagGACGCCCCGGCCAAGCTCGCTATTGTCATGAAGGTCATCGGCCGCACTGGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTTTCAAGGCAGCTGAAAGATGgtgagactagacgcaacttgggagctggctctgccgccggcagcagacatcagacttttattctaggcggcagcgctatacctgactcgctcgctaccttgccatcgctgtag

- - - - -  GCAGCT
- - - - - - CAGCTG
- - - - - -  AGCTGA
- - - - - - - - -  AAGATG