1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GCCCCAGCTGCAGAACGTCGTGGCCACTGTGAACCTAGGCACCAAGCTGGACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctggtcacgagcagttggcttgccaaggcggggacggccgctgaagccgccctctcttggcaaaccctgtcgcccagtccatcgcacctgccacggcgagctgccccctttccccccgcag
species | Chlamydomonas reinhardtii |
transcript | EDP05450 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCEST: gi|14226210|gb|BG845026.1|BG845026
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGNCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCEST: gi|15698255|gb|BI722560.1|BI722560
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCEST: gi|9210867|gb|BE337782.1|BE337782
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAA-CAACGGCGCTCEST: gi|14226211|gb|BG845027.1|BG845027
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTCEST: gi|15368028|gb|BI527454.1|BI527454
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
EST: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAG CGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
genomic: ACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctgg ... ccccccgcagCGCTTTGCCGCCGTCATCATGCGCATTCGAGAGCCGAAAACAACGGCGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCCCAGCTGCAGAACGTCGTGGCCACTGTGAACCTAGGCACCAAGCTGGACCTCAAGGAGATTGCCATGCACGCGCGTAACGCAGAATACAACCCAAAGgtggggctggtcacgagcagttggcttgccaaggcggggacggccgctgaagccgccctctcttggcaaaccctgtcgcccagtccatcgcacctgccacggcgagctgccccctttccccccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT