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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGCCGACGAGGGCAATGCCGGAGAGGACGCTGTGCACATTCGCGTGCAGCAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggctttgtcttggaggggccgctaaggcagggcctgcgggtaacacatagattgtgcaactctcggcgagacctagtcagcccctaagccctgg...

Basic information

species Chlamydomonas reinhardtii
transcript EDP05192
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15700952|gb|BI725257.1|BI725257
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|7615920|gb|AW721360.1|AW721360
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771308|gb|AV622131.1|AV622131
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14236375|gb|BG855191.1|BG855191
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6550174|gb|AV395958.1|AV395958
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15699965|gb|BI724270.1|BI724270
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10768330|gb|AV619155.1|AV619155
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22065217|gb|BQ816252.1|BQ816252
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9459278|gb|BE452527.1|BE452527
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772128|gb|AV622951.1|AV622951
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAGCCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772013|gb|AV622836.1|AV622836
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10773040|gb|AV623863.1|AV623863
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6541904|gb|AV387688.1|AV387688
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770145|gb|AV620970.1|AV620970
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|23359633|gb|BU647453.1|BU647453
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|8514205|gb|BE122100.1|BE122100
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071543|gb|BI873539.1|BI873539
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22058683|gb|BQ813067.1|BQ813067
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15693264|gb|BI717569.1|BI717569
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTGCGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22058686|gb|BQ813068.1|BQ813068
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|6546600|gb|AV392384.1|AV392384
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCATGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22066162|gb|BQ816795.1|BQ816795
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770626|gb|AV621451.1|AV621451
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16428652|gb|BI993878.1|BI993878
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771582|gb|AV622405.1|AV622405
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGGGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15701221|gb|BI725526.1|BI725526
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15372977|gb|BI532403.1|BI532403
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15700954|gb|BI725259.1|BI725259
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22072445|gb|BQ821783.1|BQ821783
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22075235|gb|BQ824011.1|BQ824011
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771717|gb|AV622540.1|AV622540
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10788520|gb|AV626240.1|AV626240
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071564|gb|BI873560.1|BI873560
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15700953|gb|BI725258.1|BI725258
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9459074|gb|BE452424.1|BE452424
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22063699|gb|BQ815372.1|BQ815372
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14238466|gb|BG857282.1|BG857282
EST:     CGCAAGTCTCTGACAACCGTCCAGGGT-TCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|15372824|gb|BI532250.1|BI532250
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|49458977|gb|BP086890.1|BP086890
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10770403|gb|AV621228.1|AV621228
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16073148|gb|BI875144.1|BI875144
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|7687070|gb|AW757718.1|AW757718
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10771916|gb|AV622739.1|AV622739
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|9441295|gb|BE441899.1|BE441899
EST:     CAGCGCAACGGCCGCAAGTCTCTGACGACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22066908|gb|BQ817228.1|BQ817228
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|10772712|gb|AV623535.1|AV623535
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|16071585|gb|BI873581.1|BI873581
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|14236442|gb|BG855258.1|BG855258
EST:     GCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAAAA                         GTACGACTACAACAGGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: GCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22064629|gb|BQ815913.1|BQ815913
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
EST: gi|22063420|gb|BQ815200.1|BQ815200
EST:     CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAA                         GTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA
genomic: CAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggct ... ttctttacagGTACGACTACAACAAGGTGCTCAAGGCCCTGAAGAAGGAGTTCTGCTGCAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCGCCGACGAGGGCAATGCCGGAGAGGACGCTGTGCACATTCGCGTGCAGCAGCGCAACGGCCGCAAGTCTCTGACAACCGTCCAGGGTCTCAAGGAGAAgtgagtggctttgtcttggaggggccgctaaggcagggcctgcgggtaacacatagattgtgcaactctcggcgagacctagtcagcccctaagccctgg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgtct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acacata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - attgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cagcccc