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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTCGTTGTCTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagccgtcagcggggttcggacgcagactggcgccacagttcggcgctccaaaagcagcgggtcctgcggcggtggctgatgttgctaccaacatggctgtag

Basic information

species Chlamydomonas reinhardtii
transcript EDP05070
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7709538|gb|AW772956.1|AW772956
EST:     CGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34987515|gb|CF561432.1|CF561432
EST:     CGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|22066976|gb|BQ817267.1|BQ817267
EST:     CTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34987514|gb|CF561431.1|CF561431
EST:     CGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTTTGCAAGGGGTGCAAGAAGCAC
genomic: CGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|10786240|gb|AV642912.1|AV642912
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|7546035|gb|AW676523.1|AW676523
EST:     CTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|22055211|gb|BQ811714.1|BQ811714
EST:     CTCGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34983766|gb|CF557683.1|CF557683
EST:     CTCGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|10788173|gb|AV644845.1|AV644845
EST:     CAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|6550594|gb|AV396378.1|AV396378
EST:     CTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|10783493|gb|AV640165.1|AV640165
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|10784804|gb|AV641476.1|AV641476
EST:     CTCGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34988338|gb|CF562255.1|CF562255
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|22074012|gb|BQ823256.1|BQ823256
EST:     GGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34981145|gb|CF555062.1|CF555062
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34989175|gb|CF563092.1|CF563092
EST:     CTCGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34988337|gb|CF562254.1|CF562254
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTTCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34984261|gb|CF558178.1|CF558178
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34982457|gb|CF556374.1|CF556374
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTTTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|7545738|gb|AW676226.1|AW676226
EST:     CGGTCAGCCAGGAAAAA-G                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|7546172|gb|AW676660.1|AW676660
EST:     CAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|7545739|gb|AW676227.1|AW676227
EST:     CGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|34984533|gb|CF558450.1|CF558450
EST:     GTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTTTGCAAGGGGTGCAAGAAGCAC
genomic: GTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|10789373|gb|AV645102.1|AV645102
EST:     CGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|7546171|gb|AW676659.1|AW676659
EST:     CAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
EST: gi|22055213|gb|BQ811715.1|BQ811715
EST:     CTCGTTCCTTCGGTCAGCCAGGAAAAATG                         GTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC
genomic: CTCGTTCCTTCGGTCAGCCAGGAAAAATGgtgagacagc ... atggctgtagGTGAACGTTCCTAAGACCAAGCGGGCGTTCTGCAAGGGGTGCAAGAAGCAC