1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CTGAAGAAGGAGTATGACAAGACGGAGGATGACCTGAAGGCGCTACAGAGCGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcccggacaacacgtactttgttgtctagggctggaggccacgtattgggtggcacaattgggactacgcgacgggtaatgtggacgggcctg...
species | Chlamydomonas reinhardtii |
transcript | EDP04786 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAEST: gi|23364905|gb|BU652725.1|BU652725
genomic: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
EST: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAEST: gi|16071428|gb|BI873424.1|BI873424
genomic: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
EST: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAEST: gi|22072895|gb|BQ822249.1|BQ822249
genomic: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
EST: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAAEST: gi|161793914|gb|FC079827.1|FC079827
genomic: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
EST: GCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTCAAGGCCAGCAGTGGGCCACGCTACGTGGTGGGCGTCCGGACAAEST: gi|15372492|gb|BI531918.1|BI531918
genomic: GCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
EST: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGAT TCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
genomic: CGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcc ... gctcgcgcagTCATTGTTAAGGCCAGCAGCGGGCCACGCTACGTGGTGGGCGTCCGGACAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTGAAGAAGGAGTATGACAAGACGGAGGATGACCTGAAGGCGCTACAGAGCGTGGGACAGATTATTGGCGAGGTGCTGCGGCAGCTGGATGAGGAGCGATgtgagtggcccggacaacacgtactttgttgtctagggctggaggccacgtattgggtggcacaattgggactacgcgacgggtaatgtggacgggcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attgggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aatgtgg